miRNA display CGI


Results 21 - 40 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31665 3' -53.9 NC_006883.1 + 26808 0.76 0.635323
Target:  5'- gCAggaCCAGuuGGACCUGGuGGACCa -3'
miRNA:   3'- aGUaaaGGUCcuCCUGGACCuCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 21948 0.76 0.615317
Target:  5'- cCAguaCCAGGAGGACCaguUGGAccuguuGGACCa -3'
miRNA:   3'- aGUaaaGGUCCUCCUGG---ACCU------CCUGG- -5'
31665 3' -53.9 NC_006883.1 + 21912 0.77 0.605328
Target:  5'- gCAUcaCCuugcGGAccuugcGGACCUGGAGGACCa -3'
miRNA:   3'- aGUAaaGGu---CCU------CCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 23287 0.79 0.50752
Target:  5'- -----aCCuGGAGGACCUuGAGGACCa -3'
miRNA:   3'- aguaaaGGuCCUCCUGGAcCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 27554 0.79 0.50752
Target:  5'- -----aCCuGGAccaccuGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGuCCU------CCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 22113 0.79 0.4887
Target:  5'- cCAUcUCCAccacucGGACCUGGAGGACCa -3'
miRNA:   3'- aGUAaAGGUccu---CCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 22159 0.79 0.470215
Target:  5'- -----aCCAcuAGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGUccUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 23698 0.8 0.452092
Target:  5'- -----aCCAGauGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGUCcuCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 26685 0.8 0.443175
Target:  5'- cCAgUUCCAccaccuGGACCUGGAGGACCg -3'
miRNA:   3'- aGUaAAGGUccu---CCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 22248 0.82 0.359862
Target:  5'- gCAgaUCCAGcAGGACCaGGAGGACCa -3'
miRNA:   3'- aGUaaAGGUCcUCCUGGaCCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28264 0.83 0.315389
Target:  5'- -----aCCAGuuGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGUCcuCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28102 0.83 0.315389
Target:  5'- -----aCCAGuuGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGUCcuCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 23247 0.83 0.301516
Target:  5'- gCAggaCCAGuuGGACCUGGAGGACCa -3'
miRNA:   3'- aGUaaaGGUCcuCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28473 0.83 0.294758
Target:  5'- cCAUcUCCAccaguaggaccuGGAGGuCCUGGAGGACCa -3'
miRNA:   3'- aGUAaAGGU------------CCUCCuGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 21976 0.85 0.233601
Target:  5'- -----aCCAGGAGGACCUGcAGGACCa -3'
miRNA:   3'- aguaaaGGUCCUCCUGGACcUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 21779 0.85 0.233601
Target:  5'- -----aCCAGaAGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGUCcUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 22194 0.85 0.22811
Target:  5'- gCAggaCCAGGAccaccacuaGGACCUGGAGGACCa -3'
miRNA:   3'- aGUaaaGGUCCU---------CCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 26993 0.86 0.217456
Target:  5'- cCAgaaCCAGGAGGACCUGGAGaACCa -3'
miRNA:   3'- aGUaaaGGUCCUCCUGGACCUCcUGG- -5'
31665 3' -53.9 NC_006883.1 + 21745 0.88 0.162154
Target:  5'- ---aUUCCAGuuGGACCUGGAGGACCa -3'
miRNA:   3'- aguaAAGGUCcuCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28563 0.89 0.150458
Target:  5'- ---gUUCCuGGuGGACCUGGAGGACCa -3'
miRNA:   3'- aguaAAGGuCCuCCUGGACCUCCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.