Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31665 | 3' | -53.9 | NC_006883.1 | + | 26808 | 0.76 | 0.635323 |
Target: 5'- gCAggaCCAGuuGGACCUGGuGGACCa -3' miRNA: 3'- aGUaaaGGUCcuCCUGGACCuCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 22216 | 0.76 | 0.655319 |
Target: 5'- -----aCCAucuGGACCUGGAGGACCa -3' miRNA: 3'- aguaaaGGUccuCCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 21912 | 0.77 | 0.605328 |
Target: 5'- gCAUcaCCuugcGGAccuugcGGACCUGGAGGACCa -3' miRNA: 3'- aGUAaaGGu---CCU------CCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 22159 | 0.79 | 0.470215 |
Target: 5'- -----aCCAcuAGGACCUGGAGGACCa -3' miRNA: 3'- aguaaaGGUccUCCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 22113 | 0.79 | 0.4887 |
Target: 5'- cCAUcUCCAccacucGGACCUGGAGGACCa -3' miRNA: 3'- aGUAaAGGUccu---CCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 27554 | 0.79 | 0.50752 |
Target: 5'- -----aCCuGGAccaccuGGACCUGGAGGACCa -3' miRNA: 3'- aguaaaGGuCCU------CCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 23287 | 0.79 | 0.50752 |
Target: 5'- -----aCCuGGAGGACCUuGAGGACCa -3' miRNA: 3'- aguaaaGGuCCUCCUGGAcCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 23698 | 0.8 | 0.452092 |
Target: 5'- -----aCCAGauGGACCUGGAGGACCa -3' miRNA: 3'- aguaaaGGUCcuCCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 26685 | 0.8 | 0.443175 |
Target: 5'- cCAgUUCCAccaccuGGACCUGGAGGACCg -3' miRNA: 3'- aGUaAAGGUccu---CCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 22248 | 0.82 | 0.359862 |
Target: 5'- gCAgaUCCAGcAGGACCaGGAGGACCa -3' miRNA: 3'- aGUaaAGGUCcUCCUGGaCCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 28473 | 0.83 | 0.294758 |
Target: 5'- cCAUcUCCAccaguaggaccuGGAGGuCCUGGAGGACCa -3' miRNA: 3'- aGUAaAGGU------------CCUCCuGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 23247 | 0.83 | 0.301516 |
Target: 5'- gCAggaCCAGuuGGACCUGGAGGACCa -3' miRNA: 3'- aGUaaaGGUCcuCCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 28264 | 0.83 | 0.315389 |
Target: 5'- -----aCCAGuuGGACCUGGAGGACCa -3' miRNA: 3'- aguaaaGGUCcuCCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 28102 | 0.83 | 0.315389 |
Target: 5'- -----aCCAGuuGGACCUGGAGGACCa -3' miRNA: 3'- aguaaaGGUCcuCCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 21976 | 0.85 | 0.233601 |
Target: 5'- -----aCCAGGAGGACCUGcAGGACCa -3' miRNA: 3'- aguaaaGGUCCUCCUGGACcUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 21779 | 0.85 | 0.233601 |
Target: 5'- -----aCCAGaAGGACCUGGAGGACCa -3' miRNA: 3'- aguaaaGGUCcUCCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 22194 | 0.85 | 0.22811 |
Target: 5'- gCAggaCCAGGAccaccacuaGGACCUGGAGGACCa -3' miRNA: 3'- aGUaaaGGUCCU---------CCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 26993 | 0.86 | 0.217456 |
Target: 5'- cCAgaaCCAGGAGGACCUGGAGaACCa -3' miRNA: 3'- aGUaaaGGUCCUCCUGGACCUCcUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 21745 | 0.88 | 0.162154 |
Target: 5'- ---aUUCCAGuuGGACCUGGAGGACCa -3' miRNA: 3'- aguaAAGGUCcuCCUGGACCUCCUGG- -5' |
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31665 | 3' | -53.9 | NC_006883.1 | + | 23739 | 0.89 | 0.136057 |
Target: 5'- cCAgaUCCAGGAggaccugcuGGACCUGGAGGACCu -3' miRNA: 3'- aGUaaAGGUCCU---------CCUGGACCUCCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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