miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31665 3' -53.9 NC_006883.1 + 23407 0.74 0.743483
Target:  5'- aUCuggUCCAGuuGGACCUGuGGGACCu -3'
miRNA:   3'- -AGuaaAGGUCcuCCUGGACcUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 23452 0.68 0.963199
Target:  5'- aUCAaucgUUCCuguauuaccuGGACCUGGuGGACCu -3'
miRNA:   3'- -AGUa---AAGGuccu------CCUGGACCuCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 23698 0.8 0.452092
Target:  5'- -----aCCAGauGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGUCcuCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 23739 0.89 0.136057
Target:  5'- cCAgaUCCAGGAggaccugcuGGACCUGGAGGACCu -3'
miRNA:   3'- aGUaaAGGUCCU---------CCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 23925 0.69 0.936682
Target:  5'- -----aCCAGuuGGACCUGuAGGACCu -3'
miRNA:   3'- aguaaaGGUCcuCCUGGACcUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 24948 0.7 0.926721
Target:  5'- -----aCCuGuAGGACCUGGAGGAgCa -3'
miRNA:   3'- aguaaaGGuCcUCCUGGACCUCCUgG- -5'
31665 3' -53.9 NC_006883.1 + 25011 0.91 0.113872
Target:  5'- -----aCCuGGAGGACCUGGAGGACCg -3'
miRNA:   3'- aguaaaGGuCCUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 26566 0.96 0.052056
Target:  5'- aUCAUUUCCAGGAGGACCUGcuGGACCu -3'
miRNA:   3'- -AGUAAAGGUCCUCCUGGACcuCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 26685 0.8 0.443175
Target:  5'- cCAgUUCCAccaccuGGACCUGGAGGACCg -3'
miRNA:   3'- aGUaAAGGUccu---CCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 26719 0.96 0.052056
Target:  5'- aUCAUUUCCAGGAGGACCUGcuGGACCu -3'
miRNA:   3'- -AGUAAAGGUCCUCCUGGACcuCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 26781 0.71 0.897834
Target:  5'- gCAggaCCAGuuGGACCUGcAGGACCa -3'
miRNA:   3'- aGUaaaGGUCcuCCUGGACcUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 26808 0.76 0.635323
Target:  5'- gCAggaCCAGuuGGACCUGGuGGACCa -3'
miRNA:   3'- aGUaaaGGUCcuCCUGGACCuCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 26993 0.86 0.217456
Target:  5'- cCAgaaCCAGGAGGACCUGGAGaACCa -3'
miRNA:   3'- aGUaaaGGUCCUCCUGGACCUCcUGG- -5'
31665 3' -53.9 NC_006883.1 + 27529 0.66 0.984233
Target:  5'- nCAUcUCCaccuguAGGAccugauGGACCUGuAGGACCu -3'
miRNA:   3'- aGUAaAGG------UCCU------CCUGGACcUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 27554 0.79 0.50752
Target:  5'- -----aCCuGGAccaccuGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGuCCU------CCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 27599 1.13 0.004739
Target:  5'- aUCAUUUCCAGGAGGACCUGGAGGACCu -3'
miRNA:   3'- -AGUAAAGGUCCUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 27671 1.13 0.004739
Target:  5'- aUCAUUUCCAGGAGGACCUGGAGGACCu -3'
miRNA:   3'- -AGUAAAGGUCCUCCUGGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 27729 0.66 0.984233
Target:  5'- ----gUCCuGuGGGACCUGucGGACCa -3'
miRNA:   3'- aguaaAGGuCcUCCUGGACcuCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 27760 0.71 0.897834
Target:  5'- gCAggaCCAGuuGGACCUGuGGGACCa -3'
miRNA:   3'- aGUaaaGGUCcuCCUGGACcUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28067 0.68 0.959082
Target:  5'- cCAggUCCAGGcGGAaCUGGuccugcugguccuccAGGACCu -3'
miRNA:   3'- aGUaaAGGUCCuCCUgGACC---------------UCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.