miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31666 5' -52.8 NC_006883.1 + 21869 0.66 0.990595
Target:  5'- gACCAGa-GGACCAGcaGGuCCaGUAGg -3'
miRNA:   3'- -UGGUCaaCCUGGUCaaCCuGGaCAUC- -5'
31666 5' -52.8 NC_006883.1 + 26687 0.67 0.989317
Target:  5'- uACCAGUUccACCAccUGGACCUGgAGg -3'
miRNA:   3'- -UGGUCAAccUGGUcaACCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 26759 0.67 0.98281
Target:  5'- gACCAGUUGcACCAGcaGGACCa---- -3'
miRNA:   3'- -UGGUCAACcUGGUCaaCCUGGacauc -5'
31666 5' -52.8 NC_006883.1 + 210944 0.68 0.978606
Target:  5'- gACCAGaaucuacaagUGGACCAGUUGG-CCa---- -3'
miRNA:   3'- -UGGUCa---------ACCUGGUCAACCuGGacauc -5'
31666 5' -52.8 NC_006883.1 + 222951 0.68 0.976239
Target:  5'- cACCAGcaGGACCAGcaGGACCa---- -3'
miRNA:   3'- -UGGUCaaCCUGGUCaaCCUGGacauc -5'
31666 5' -52.8 NC_006883.1 + 222987 0.68 0.967991
Target:  5'- aACCAGcaGGACCAGgUGaACCUuGUGGa -3'
miRNA:   3'- -UGGUCaaCCUGGUCaACcUGGA-CAUC- -5'
31666 5' -52.8 NC_006883.1 + 22133 0.69 0.964838
Target:  5'- aACCAcUUGGACCAGcaGGACCa---- -3'
miRNA:   3'- -UGGUcAACCUGGUCaaCCUGGacauc -5'
31666 5' -52.8 NC_006883.1 + 28466 0.69 0.964838
Target:  5'- cACCAGUaGGACCuGgaGGuCCUGgAGg -3'
miRNA:   3'- -UGGUCAaCCUGGuCaaCCuGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 231982 0.69 0.961474
Target:  5'- uCCAGUUGGAguuggaaCAGgauuUGGACCUGg-- -3'
miRNA:   3'- uGGUCAACCUg------GUCa---ACCUGGACauc -5'
31666 5' -52.8 NC_006883.1 + 22199 0.71 0.914182
Target:  5'- gACCAGcaGGACCAGgaccaccacuaGGACCUGgAGg -3'
miRNA:   3'- -UGGUCaaCCUGGUCaa---------CCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 218574 0.71 0.890344
Target:  5'- uCCAGUUGGAauuuauacugcuCCAGUUGGAUauaGUGGu -3'
miRNA:   3'- uGGUCAACCU------------GGUCAACCUGga-CAUC- -5'
31666 5' -52.8 NC_006883.1 + 27558 0.72 0.883524
Target:  5'- cACCAccUGGACCAccUGGACCUGgAGg -3'
miRNA:   3'- -UGGUcaACCUGGUcaACCUGGACaUC- -5'
31666 5' -52.8 NC_006883.1 + 223041 0.72 0.883524
Target:  5'- cACCAGaaGGACCAGUaGGACCa---- -3'
miRNA:   3'- -UGGUCaaCCUGGUCAaCCUGGacauc -5'
31666 5' -52.8 NC_006883.1 + 23734 0.72 0.861761
Target:  5'- uCCAGgaGGACCuGcUGGACCUGg-- -3'
miRNA:   3'- uGGUCaaCCUGGuCaACCUGGACauc -5'
31666 5' -52.8 NC_006883.1 + 26713 0.72 0.861761
Target:  5'- uCCAGgaGGACCuGcUGGACCUGg-- -3'
miRNA:   3'- uGGUCaaCCUGGuCaACCUGGACauc -5'
31666 5' -52.8 NC_006883.1 + 21726 0.72 0.854089
Target:  5'- gACCAGcaGGACCAGUaGGACCa---- -3'
miRNA:   3'- -UGGUCaaCCUGGUCAaCCUGGacauc -5'
31666 5' -52.8 NC_006883.1 + 27593 0.73 0.838155
Target:  5'- uCCAGgaGGACCuGgaGGACCUGcUGGa -3'
miRNA:   3'- uGGUCaaCCUGGuCaaCCUGGAC-AUC- -5'
31666 5' -52.8 NC_006883.1 + 27665 0.73 0.838155
Target:  5'- uCCAGgaGGACCuGgaGGACCUGcUGGa -3'
miRNA:   3'- uGGUCaaCCUGGuCaaCCUGGAC-AUC- -5'
31666 5' -52.8 NC_006883.1 + 28229 0.73 0.838155
Target:  5'- gACCAGcaGGACCAGUcGGACCaGUu- -3'
miRNA:   3'- -UGGUCaaCCUGGUCAaCCUGGaCAuc -5'
31666 5' -52.8 NC_006883.1 + 23306 0.73 0.812883
Target:  5'- gACCAGUUGGACCAccgauaccuGgaGGACCUugAGg -3'
miRNA:   3'- -UGGUCAACCUGGU---------CaaCCUGGAcaUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.