Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
31667 | 5' | -56.6 | NC_006883.1 | + | 27371 | 0.66 | 0.94989 |
Target: 5'- aACUGGUacuccAGGuCCAGCAGGuccuCCAGg- -3' miRNA: 3'- gUGGUCA-----UCCuGGUCGUCCu---GGUCag -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 26713 | 0.66 | 0.931859 |
Target: 5'- -uCCAGgAGGACCuGCuGGACCuggAGUa -3' miRNA: 3'- guGGUCaUCCUGGuCGuCCUGG---UCAg -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 27585 | 0.66 | 0.926789 |
Target: 5'- gACCuGgAGGACCuGCuGGACCuGUg -3' miRNA: 3'- gUGGuCaUCCUGGuCGuCCUGGuCAg -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 23366 | 0.67 | 0.904247 |
Target: 5'- gACCuGgauuugaAGGACCuaCAGGACCAGUUg -3' miRNA: 3'- gUGGuCa------UCCUGGucGUCCUGGUCAG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 23742 | 0.68 | 0.856417 |
Target: 5'- cCACCAGauccaggAGGACCuGCuGGACCuGg- -3' miRNA: 3'- -GUGGUCa------UCCUGGuCGuCCUGGuCag -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 28491 | 0.69 | 0.832938 |
Target: 5'- cCACCu---GGACCAGgAGGACCA-UCu -3' miRNA: 3'- -GUGGucauCCUGGUCgUCCUGGUcAG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 22182 | 0.71 | 0.753975 |
Target: 5'- cCACCAcUAGGACCuGgAGGACCAc-- -3' miRNA: 3'- -GUGGUcAUCCUGGuCgUCCUGGUcag -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 23420 | 0.71 | 0.744582 |
Target: 5'- gACCuGUAGGACCAuCuGGuCCAGUUg -3' miRNA: 3'- gUGGuCAUCCUGGUcGuCCuGGUCAG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 28265 | 0.71 | 0.706161 |
Target: 5'- gACCAGUuGGACCuGgAGGACCA-UCu -3' miRNA: 3'- gUGGUCAuCCUGGuCgUCCUGGUcAG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 26989 | 0.72 | 0.666789 |
Target: 5'- aACCAGgAGGACCuggagaaccAGCAGGACCuuGUg -3' miRNA: 3'- gUGGUCaUCCUGG---------UCGUCCUGGu-CAg -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 26660 | 0.73 | 0.607082 |
Target: 5'- gACCGucuGGACCAGUuGGACCAGUUn -3' miRNA: 3'- gUGGUcauCCUGGUCGuCCUGGUCAG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 26543 | 0.73 | 0.607082 |
Target: 5'- gACCuGUAGGACCuGCuGGACCAu-- -3' miRNA: 3'- gUGGuCAUCCUGGuCGuCCUGGUcag -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 28467 | 0.74 | 0.577369 |
Target: 5'- cCACCAGUAGGACCuggagguccuGgAGGACCAc-- -3' miRNA: 3'- -GUGGUCAUCCUGGu---------CgUCCUGGUcag -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 27720 | 0.74 | 0.567531 |
Target: 5'- gACCuGUcGGACCAGUAGGACCuGaUCc -3' miRNA: 3'- gUGGuCAuCCUGGUCGUCCUGGuC-AG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 23324 | 0.75 | 0.519094 |
Target: 5'- aACCAGcAGGACCuugAGGACCAGUUg -3' miRNA: 3'- gUGGUCaUCCUGGucgUCCUGGUCAG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 27504 | 0.75 | 0.519094 |
Target: 5'- gACCuGUAGGACCugcuggaccuGUAGGACCAGg- -3' miRNA: 3'- gUGGuCAUCCUGGu---------CGUCCUGGUCag -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 23253 | 0.75 | 0.481555 |
Target: 5'- uCACCAGcAGGACCAGUuGGACCuGg- -3' miRNA: 3'- -GUGGUCaUCCUGGUCGuCCUGGuCag -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 22254 | 0.76 | 0.454284 |
Target: 5'- gCACCAGcAGauCCAGCAGGACCAGg- -3' miRNA: 3'- -GUGGUCaUCcuGGUCGUCCUGGUCag -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 23917 | 0.76 | 0.445381 |
Target: 5'- gACCuGUAGGACCuGCuGGACCuGUUg -3' miRNA: 3'- gUGGuCAUCCUGGuCGuCCUGGuCAG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 23159 | 0.77 | 0.427873 |
Target: 5'- aACCuGgAGcACCAGCAGGACCAGUUg -3' miRNA: 3'- gUGGuCaUCcUGGUCGUCCUGGUCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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