miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31667 5' -56.6 NC_006883.1 + 27371 0.66 0.94989
Target:  5'- aACUGGUacuccAGGuCCAGCAGGuccuCCAGg- -3'
miRNA:   3'- gUGGUCA-----UCCuGGUCGUCCu---GGUCag -5'
31667 5' -56.6 NC_006883.1 + 26713 0.66 0.931859
Target:  5'- -uCCAGgAGGACCuGCuGGACCuggAGUa -3'
miRNA:   3'- guGGUCaUCCUGGuCGuCCUGG---UCAg -5'
31667 5' -56.6 NC_006883.1 + 27585 0.66 0.926789
Target:  5'- gACCuGgAGGACCuGCuGGACCuGUg -3'
miRNA:   3'- gUGGuCaUCCUGGuCGuCCUGGuCAg -5'
31667 5' -56.6 NC_006883.1 + 23366 0.67 0.904247
Target:  5'- gACCuGgauuugaAGGACCuaCAGGACCAGUUg -3'
miRNA:   3'- gUGGuCa------UCCUGGucGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 23742 0.68 0.856417
Target:  5'- cCACCAGauccaggAGGACCuGCuGGACCuGg- -3'
miRNA:   3'- -GUGGUCa------UCCUGGuCGuCCUGGuCag -5'
31667 5' -56.6 NC_006883.1 + 28491 0.69 0.832938
Target:  5'- cCACCu---GGACCAGgAGGACCA-UCu -3'
miRNA:   3'- -GUGGucauCCUGGUCgUCCUGGUcAG- -5'
31667 5' -56.6 NC_006883.1 + 22182 0.71 0.753975
Target:  5'- cCACCAcUAGGACCuGgAGGACCAc-- -3'
miRNA:   3'- -GUGGUcAUCCUGGuCgUCCUGGUcag -5'
31667 5' -56.6 NC_006883.1 + 23420 0.71 0.744582
Target:  5'- gACCuGUAGGACCAuCuGGuCCAGUUg -3'
miRNA:   3'- gUGGuCAUCCUGGUcGuCCuGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 28265 0.71 0.706161
Target:  5'- gACCAGUuGGACCuGgAGGACCA-UCu -3'
miRNA:   3'- gUGGUCAuCCUGGuCgUCCUGGUcAG- -5'
31667 5' -56.6 NC_006883.1 + 26989 0.72 0.666789
Target:  5'- aACCAGgAGGACCuggagaaccAGCAGGACCuuGUg -3'
miRNA:   3'- gUGGUCaUCCUGG---------UCGUCCUGGu-CAg -5'
31667 5' -56.6 NC_006883.1 + 26543 0.73 0.607082
Target:  5'- gACCuGUAGGACCuGCuGGACCAu-- -3'
miRNA:   3'- gUGGuCAUCCUGGuCGuCCUGGUcag -5'
31667 5' -56.6 NC_006883.1 + 26660 0.73 0.607082
Target:  5'- gACCGucuGGACCAGUuGGACCAGUUn -3'
miRNA:   3'- gUGGUcauCCUGGUCGuCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 28467 0.74 0.577369
Target:  5'- cCACCAGUAGGACCuggagguccuGgAGGACCAc-- -3'
miRNA:   3'- -GUGGUCAUCCUGGu---------CgUCCUGGUcag -5'
31667 5' -56.6 NC_006883.1 + 27720 0.74 0.567531
Target:  5'- gACCuGUcGGACCAGUAGGACCuGaUCc -3'
miRNA:   3'- gUGGuCAuCCUGGUCGUCCUGGuC-AG- -5'
31667 5' -56.6 NC_006883.1 + 23324 0.75 0.519094
Target:  5'- aACCAGcAGGACCuugAGGACCAGUUg -3'
miRNA:   3'- gUGGUCaUCCUGGucgUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 27504 0.75 0.519094
Target:  5'- gACCuGUAGGACCugcuggaccuGUAGGACCAGg- -3'
miRNA:   3'- gUGGuCAUCCUGGu---------CGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 23253 0.75 0.481555
Target:  5'- uCACCAGcAGGACCAGUuGGACCuGg- -3'
miRNA:   3'- -GUGGUCaUCCUGGUCGuCCUGGuCag -5'
31667 5' -56.6 NC_006883.1 + 22254 0.76 0.454284
Target:  5'- gCACCAGcAGauCCAGCAGGACCAGg- -3'
miRNA:   3'- -GUGGUCaUCcuGGUCGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 23917 0.76 0.445381
Target:  5'- gACCuGUAGGACCuGCuGGACCuGUUg -3'
miRNA:   3'- gUGGuCAUCCUGGuCGuCCUGGuCAG- -5'
31667 5' -56.6 NC_006883.1 + 23159 0.77 0.427873
Target:  5'- aACCuGgAGcACCAGCAGGACCAGUUg -3'
miRNA:   3'- gUGGuCaUCcUGGUCGUCCUGGUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.