miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31667 5' -56.6 NC_006883.1 + 28239 1.1 0.003427
Target:  5'- cCACCAGUAGGACCAGCAGGACCAGUCg -3'
miRNA:   3'- -GUGGUCAUCCUGGUCGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 222924 1.02 0.01124
Target:  5'- aACCAGUAGGACCAGCAGGACCAGUa -3'
miRNA:   3'- gUGGUCAUCCUGGUCGUCCUGGUCAg -5'
31667 5' -56.6 NC_006883.1 + 26634 0.99 0.018733
Target:  5'- cCACCuGUGGGACCAGCAGGACCAGUUg -3'
miRNA:   3'- -GUGGuCAUCCUGGUCGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 22022 0.95 0.030321
Target:  5'- gACCcGUAGGACCAGCAGGACCAGUUg -3'
miRNA:   3'- gUGGuCAUCCUGGUCGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 28299 0.94 0.039564
Target:  5'- uCACCAGUAGGACCAGUuGGACCAGUUc -3'
miRNA:   3'- -GUGGUCAUCCUGGUCGuCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 222952 0.94 0.039564
Target:  5'- cCACCAGcAGGACCAGCAGGACCAGg- -3'
miRNA:   3'- -GUGGUCaUCCUGGUCGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 28368 0.92 0.051548
Target:  5'- gCACCAGgagguccuggAGGACCAGCAGGACCAGUUc -3'
miRNA:   3'- -GUGGUCa---------UCCUGGUCGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 26823 0.91 0.057274
Target:  5'- aCACCuugGGGACCAGCAGGACCAGUUg -3'
miRNA:   3'- -GUGGucaUCCUGGUCGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 223042 0.9 0.067033
Target:  5'- cCACCAGaAGGACCAGUAGGACCAGg- -3'
miRNA:   3'- -GUGGUCaUCCUGGUCGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 26777 0.89 0.080449
Target:  5'- gACCAGUuGGACCuGCAGGACCAGUUg -3'
miRNA:   3'- gUGGUCAuCCUGGuCGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 21735 0.87 0.104127
Target:  5'- gACCuGgAGGACCAGCAGGACCAGUa -3'
miRNA:   3'- gUGGuCaUCCUGGUCGUCCUGGUCAg -5'
31667 5' -56.6 NC_006883.1 + 21869 0.86 0.124456
Target:  5'- gACCAG-AGGACCAGCAGGuCCAGUa -3'
miRNA:   3'- gUGGUCaUCCUGGUCGUCCuGGUCAg -5'
31667 5' -56.6 NC_006883.1 + 23223 0.86 0.127645
Target:  5'- cCACCAGcAGGACCAGgAGGACCAGg- -3'
miRNA:   3'- -GUGGUCaUCCUGGUCgUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 28176 0.86 0.127645
Target:  5'- gCACCAGcAGGACCAGUuGGACCAGUUc -3'
miRNA:   3'- -GUGGUCaUCCUGGUCGuCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 21817 0.85 0.13767
Target:  5'- uCACCuugAGGGCCAGCAGGACCAGg- -3'
miRNA:   3'- -GUGGucaUCCUGGUCGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 23699 0.85 0.148413
Target:  5'- gACCAGauggaccuggAGGACCAGCAGGACCAGg- -3'
miRNA:   3'- gUGGUCa---------UCCUGGUCGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 23944 0.85 0.148413
Target:  5'- aACCAGUcGGACCAGUuGGACCAGUUg -3'
miRNA:   3'- gUGGUCAuCCUGGUCGuCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 21977 0.84 0.152161
Target:  5'- gACCAGgAGGACCuGCAGGACCAGg- -3'
miRNA:   3'- gUGGUCaUCCUGGuCGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 22208 0.84 0.152161
Target:  5'- gACCuGgAGGACCAGCAGGACCAGg- -3'
miRNA:   3'- gUGGuCaUCCUGGUCGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 28517 0.84 0.168023
Target:  5'- gACCAGUuGGACCAGUcGGACCAGUUc -3'
miRNA:   3'- gUGGUCAuCCUGGUCGuCCUGGUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.