Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31667 | 5' | -56.6 | NC_006883.1 | + | 23393 | 0.84 | 0.172214 |
Target: 5'- gACCuGUGGGACCuGUGGGACCAGUUg -3' miRNA: 3'- gUGGuCAUCCUGGuCGUCCUGGUCAG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 27756 | 0.83 | 0.185351 |
Target: 5'- gACCAGUuGGACCuGUGGGACCAGUUg -3' miRNA: 3'- gUGGUCAuCCUGGuCGUCCUGGUCAG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 22079 | 0.83 | 0.189922 |
Target: 5'- gACCAGgAGGACCuggaggaccaccAGCAGGACCAGUUg -3' miRNA: 3'- gUGGUCaUCCUGG------------UCGUCCUGGUCAG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 23186 | 0.83 | 0.194593 |
Target: 5'- gACCAucAGGACCAGCAGGuCCAGUUa -3' miRNA: 3'- gUGGUcaUCCUGGUCGUCCuGGUCAG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 222997 | 0.83 | 0.199364 |
Target: 5'- gCACCAGgcGaACCAGCAGGACCAGg- -3' miRNA: 3'- -GUGGUCauCcUGGUCGUCCUGGUCag -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 28103 | 0.8 | 0.271075 |
Target: 5'- gACCAGUuggaccuggAGGACCAGCAGGACCu--- -3' miRNA: 3'- gUGGUCA---------UCCUGGUCGUCCUGGucag -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 28149 | 0.8 | 0.277375 |
Target: 5'- cCACCuGaAGGACCAGUuGGACCAGUUg -3' miRNA: 3'- -GUGGuCaUCCUGGUCGuCCUGGUCAG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 223081 | 0.79 | 0.324753 |
Target: 5'- cCACCAGcAGGACCAGgAGGACCuGg- -3' miRNA: 3'- -GUGGUCaUCCUGGUCgUCCUGGuCag -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 21945 | 0.78 | 0.362129 |
Target: 5'- gUACCAGgAGGACCAGUuGGACCuGUUg -3' miRNA: 3'- -GUGGUCaUCCUGGUCGuCCUGGuCAG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 22142 | 0.78 | 0.36838 |
Target: 5'- gACCAGgugaaccacuuGGACCAGCAGGACCA-UCu -3' miRNA: 3'- gUGGUCau---------CCUGGUCGUCCUGGUcAG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 21780 | 0.77 | 0.394114 |
Target: 5'- gACCAGaaggaccuggAGGACCAGaAGGACCAGUUa -3' miRNA: 3'- gUGGUCa---------UCCUGGUCgUCCUGGUCAG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 23159 | 0.77 | 0.427873 |
Target: 5'- aACCuGgAGcACCAGCAGGACCAGUUg -3' miRNA: 3'- gUGGuCaUCcUGGUCGUCCUGGUCAG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 23917 | 0.76 | 0.445381 |
Target: 5'- gACCuGUAGGACCuGCuGGACCuGUUg -3' miRNA: 3'- gUGGuCAUCCUGGuCGuCCUGGuCAG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 22254 | 0.76 | 0.454284 |
Target: 5'- gCACCAGcAGauCCAGCAGGACCAGg- -3' miRNA: 3'- -GUGGUCaUCcuGGUCGUCCUGGUCag -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 23253 | 0.75 | 0.481555 |
Target: 5'- uCACCAGcAGGACCAGUuGGACCuGg- -3' miRNA: 3'- -GUGGUCaUCCUGGUCGuCCUGGuCag -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 23324 | 0.75 | 0.519094 |
Target: 5'- aACCAGcAGGACCuugAGGACCAGUUg -3' miRNA: 3'- gUGGUCaUCCUGGucgUCCUGGUCAG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 27504 | 0.75 | 0.519094 |
Target: 5'- gACCuGUAGGACCugcuggaccuGUAGGACCAGg- -3' miRNA: 3'- gUGGuCAUCCUGGu---------CGUCCUGGUCag -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 27720 | 0.74 | 0.567531 |
Target: 5'- gACCuGUcGGACCAGUAGGACCuGaUCc -3' miRNA: 3'- gUGGuCAuCCUGGUCGUCCUGGuC-AG- -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 28467 | 0.74 | 0.577369 |
Target: 5'- cCACCAGUAGGACCuggagguccuGgAGGACCAc-- -3' miRNA: 3'- -GUGGUCAUCCUGGu---------CgUCCUGGUcag -5' |
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31667 | 5' | -56.6 | NC_006883.1 | + | 26543 | 0.73 | 0.607082 |
Target: 5'- gACCuGUAGGACCuGCuGGACCAu-- -3' miRNA: 3'- gUGGuCAUCCUGGuCGuCCUGGUcag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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