miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31667 5' -56.6 NC_006883.1 + 23699 0.85 0.148413
Target:  5'- gACCAGauggaccuggAGGACCAGCAGGACCAGg- -3'
miRNA:   3'- gUGGUCa---------UCCUGGUCGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 23742 0.68 0.856417
Target:  5'- cCACCAGauccaggAGGACCuGCuGGACCuGg- -3'
miRNA:   3'- -GUGGUCa------UCCUGGuCGuCCUGGuCag -5'
31667 5' -56.6 NC_006883.1 + 23917 0.76 0.445381
Target:  5'- gACCuGUAGGACCuGCuGGACCuGUUg -3'
miRNA:   3'- gUGGuCAUCCUGGuCGuCCUGGuCAG- -5'
31667 5' -56.6 NC_006883.1 + 23944 0.85 0.148413
Target:  5'- aACCAGUcGGACCAGUuGGACCAGUUg -3'
miRNA:   3'- gUGGUCAuCCUGGUCGuCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 26543 0.73 0.607082
Target:  5'- gACCuGUAGGACCuGCuGGACCAu-- -3'
miRNA:   3'- gUGGuCAUCCUGGuCGuCCUGGUcag -5'
31667 5' -56.6 NC_006883.1 + 26634 0.99 0.018733
Target:  5'- cCACCuGUGGGACCAGCAGGACCAGUUg -3'
miRNA:   3'- -GUGGuCAUCCUGGUCGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 26660 0.73 0.607082
Target:  5'- gACCGucuGGACCAGUuGGACCAGUUn -3'
miRNA:   3'- gUGGUcauCCUGGUCGuCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 26713 0.66 0.931859
Target:  5'- -uCCAGgAGGACCuGCuGGACCuggAGUa -3'
miRNA:   3'- guGGUCaUCCUGGuCGuCCUGG---UCAg -5'
31667 5' -56.6 NC_006883.1 + 26777 0.89 0.080449
Target:  5'- gACCAGUuGGACCuGCAGGACCAGUUg -3'
miRNA:   3'- gUGGUCAuCCUGGuCGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 26823 0.91 0.057274
Target:  5'- aCACCuugGGGACCAGCAGGACCAGUUg -3'
miRNA:   3'- -GUGGucaUCCUGGUCGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 26989 0.72 0.666789
Target:  5'- aACCAGgAGGACCuggagaaccAGCAGGACCuuGUg -3'
miRNA:   3'- gUGGUCaUCCUGG---------UCGUCCUGGu-CAg -5'
31667 5' -56.6 NC_006883.1 + 27371 0.66 0.94989
Target:  5'- aACUGGUacuccAGGuCCAGCAGGuccuCCAGg- -3'
miRNA:   3'- gUGGUCA-----UCCuGGUCGUCCu---GGUCag -5'
31667 5' -56.6 NC_006883.1 + 27504 0.75 0.519094
Target:  5'- gACCuGUAGGACCugcuggaccuGUAGGACCAGg- -3'
miRNA:   3'- gUGGuCAUCCUGGu---------CGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 27585 0.66 0.926789
Target:  5'- gACCuGgAGGACCuGCuGGACCuGUg -3'
miRNA:   3'- gUGGuCaUCCUGGuCGuCCUGGuCAg -5'
31667 5' -56.6 NC_006883.1 + 27720 0.74 0.567531
Target:  5'- gACCuGUcGGACCAGUAGGACCuGaUCc -3'
miRNA:   3'- gUGGuCAuCCUGGUCGUCCUGGuC-AG- -5'
31667 5' -56.6 NC_006883.1 + 27756 0.83 0.185351
Target:  5'- gACCAGUuGGACCuGUGGGACCAGUUg -3'
miRNA:   3'- gUGGUCAuCCUGGuCGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 28103 0.8 0.271075
Target:  5'- gACCAGUuggaccuggAGGACCAGCAGGACCu--- -3'
miRNA:   3'- gUGGUCA---------UCCUGGUCGUCCUGGucag -5'
31667 5' -56.6 NC_006883.1 + 28149 0.8 0.277375
Target:  5'- cCACCuGaAGGACCAGUuGGACCAGUUg -3'
miRNA:   3'- -GUGGuCaUCCUGGUCGuCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 28176 0.86 0.127645
Target:  5'- gCACCAGcAGGACCAGUuGGACCAGUUc -3'
miRNA:   3'- -GUGGUCaUCCUGGUCGuCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 28239 1.1 0.003427
Target:  5'- cCACCAGUAGGACCAGCAGGACCAGUCg -3'
miRNA:   3'- -GUGGUCAUCCUGGUCGUCCUGGUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.