miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31667 5' -56.6 NC_006883.1 + 21735 0.87 0.104127
Target:  5'- gACCuGgAGGACCAGCAGGACCAGUa -3'
miRNA:   3'- gUGGuCaUCCUGGUCGUCCUGGUCAg -5'
31667 5' -56.6 NC_006883.1 + 21780 0.77 0.394114
Target:  5'- gACCAGaaggaccuggAGGACCAGaAGGACCAGUUa -3'
miRNA:   3'- gUGGUCa---------UCCUGGUCgUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 21817 0.85 0.13767
Target:  5'- uCACCuugAGGGCCAGCAGGACCAGg- -3'
miRNA:   3'- -GUGGucaUCCUGGUCGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 21869 0.86 0.124456
Target:  5'- gACCAG-AGGACCAGCAGGuCCAGUa -3'
miRNA:   3'- gUGGUCaUCCUGGUCGUCCuGGUCAg -5'
31667 5' -56.6 NC_006883.1 + 21945 0.78 0.362129
Target:  5'- gUACCAGgAGGACCAGUuGGACCuGUUg -3'
miRNA:   3'- -GUGGUCaUCCUGGUCGuCCUGGuCAG- -5'
31667 5' -56.6 NC_006883.1 + 21977 0.84 0.152161
Target:  5'- gACCAGgAGGACCuGCAGGACCAGg- -3'
miRNA:   3'- gUGGUCaUCCUGGuCGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 22022 0.95 0.030321
Target:  5'- gACCcGUAGGACCAGCAGGACCAGUUg -3'
miRNA:   3'- gUGGuCAUCCUGGUCGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 22079 0.83 0.189922
Target:  5'- gACCAGgAGGACCuggaggaccaccAGCAGGACCAGUUg -3'
miRNA:   3'- gUGGUCaUCCUGG------------UCGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 22142 0.78 0.36838
Target:  5'- gACCAGgugaaccacuuGGACCAGCAGGACCA-UCu -3'
miRNA:   3'- gUGGUCau---------CCUGGUCGUCCUGGUcAG- -5'
31667 5' -56.6 NC_006883.1 + 22182 0.71 0.753975
Target:  5'- cCACCAcUAGGACCuGgAGGACCAc-- -3'
miRNA:   3'- -GUGGUcAUCCUGGuCgUCCUGGUcag -5'
31667 5' -56.6 NC_006883.1 + 22208 0.84 0.152161
Target:  5'- gACCuGgAGGACCAGCAGGACCAGg- -3'
miRNA:   3'- gUGGuCaUCCUGGUCGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 22254 0.76 0.454284
Target:  5'- gCACCAGcAGauCCAGCAGGACCAGg- -3'
miRNA:   3'- -GUGGUCaUCcuGGUCGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 23159 0.77 0.427873
Target:  5'- aACCuGgAGcACCAGCAGGACCAGUUg -3'
miRNA:   3'- gUGGuCaUCcUGGUCGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 23186 0.83 0.194593
Target:  5'- gACCAucAGGACCAGCAGGuCCAGUUa -3'
miRNA:   3'- gUGGUcaUCCUGGUCGUCCuGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 23223 0.86 0.127645
Target:  5'- cCACCAGcAGGACCAGgAGGACCAGg- -3'
miRNA:   3'- -GUGGUCaUCCUGGUCgUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 23253 0.75 0.481555
Target:  5'- uCACCAGcAGGACCAGUuGGACCuGg- -3'
miRNA:   3'- -GUGGUCaUCCUGGUCGuCCUGGuCag -5'
31667 5' -56.6 NC_006883.1 + 23324 0.75 0.519094
Target:  5'- aACCAGcAGGACCuugAGGACCAGUUg -3'
miRNA:   3'- gUGGUCaUCCUGGucgUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 23366 0.67 0.904247
Target:  5'- gACCuGgauuugaAGGACCuaCAGGACCAGUUg -3'
miRNA:   3'- gUGGuCa------UCCUGGucGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 23393 0.84 0.172214
Target:  5'- gACCuGUGGGACCuGUGGGACCAGUUg -3'
miRNA:   3'- gUGGuCAUCCUGGuCGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 23420 0.71 0.744582
Target:  5'- gACCuGUAGGACCAuCuGGuCCAGUUg -3'
miRNA:   3'- gUGGuCAUCCUGGUcGuCCuGGUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.