miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31667 5' -56.6 NC_006883.1 + 223081 0.79 0.324753
Target:  5'- cCACCAGcAGGACCAGgAGGACCuGg- -3'
miRNA:   3'- -GUGGUCaUCCUGGUCgUCCUGGuCag -5'
31667 5' -56.6 NC_006883.1 + 223042 0.9 0.067033
Target:  5'- cCACCAGaAGGACCAGUAGGACCAGg- -3'
miRNA:   3'- -GUGGUCaUCCUGGUCGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 222997 0.83 0.199364
Target:  5'- gCACCAGgcGaACCAGCAGGACCAGg- -3'
miRNA:   3'- -GUGGUCauCcUGGUCGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 222952 0.94 0.039564
Target:  5'- cCACCAGcAGGACCAGCAGGACCAGg- -3'
miRNA:   3'- -GUGGUCaUCCUGGUCGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 222924 1.02 0.01124
Target:  5'- aACCAGUAGGACCAGCAGGACCAGUa -3'
miRNA:   3'- gUGGUCAUCCUGGUCGUCCUGGUCAg -5'
31667 5' -56.6 NC_006883.1 + 28517 0.84 0.168023
Target:  5'- gACCAGUuGGACCAGUcGGACCAGUUc -3'
miRNA:   3'- gUGGUCAuCCUGGUCGuCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 28491 0.69 0.832938
Target:  5'- cCACCu---GGACCAGgAGGACCA-UCu -3'
miRNA:   3'- -GUGGucauCCUGGUCgUCCUGGUcAG- -5'
31667 5' -56.6 NC_006883.1 + 28467 0.74 0.577369
Target:  5'- cCACCAGUAGGACCuggagguccuGgAGGACCAc-- -3'
miRNA:   3'- -GUGGUCAUCCUGGu---------CgUCCUGGUcag -5'
31667 5' -56.6 NC_006883.1 + 28368 0.92 0.051548
Target:  5'- gCACCAGgagguccuggAGGACCAGCAGGACCAGUUc -3'
miRNA:   3'- -GUGGUCa---------UCCUGGUCGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 28299 0.94 0.039564
Target:  5'- uCACCAGUAGGACCAGUuGGACCAGUUc -3'
miRNA:   3'- -GUGGUCAUCCUGGUCGuCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 28265 0.71 0.706161
Target:  5'- gACCAGUuGGACCuGgAGGACCA-UCu -3'
miRNA:   3'- gUGGUCAuCCUGGuCgUCCUGGUcAG- -5'
31667 5' -56.6 NC_006883.1 + 28239 1.1 0.003427
Target:  5'- cCACCAGUAGGACCAGCAGGACCAGUCg -3'
miRNA:   3'- -GUGGUCAUCCUGGUCGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 28176 0.86 0.127645
Target:  5'- gCACCAGcAGGACCAGUuGGACCAGUUc -3'
miRNA:   3'- -GUGGUCaUCCUGGUCGuCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 28149 0.8 0.277375
Target:  5'- cCACCuGaAGGACCAGUuGGACCAGUUg -3'
miRNA:   3'- -GUGGuCaUCCUGGUCGuCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 28103 0.8 0.271075
Target:  5'- gACCAGUuggaccuggAGGACCAGCAGGACCu--- -3'
miRNA:   3'- gUGGUCA---------UCCUGGUCGUCCUGGucag -5'
31667 5' -56.6 NC_006883.1 + 27756 0.83 0.185351
Target:  5'- gACCAGUuGGACCuGUGGGACCAGUUg -3'
miRNA:   3'- gUGGUCAuCCUGGuCGUCCUGGUCAG- -5'
31667 5' -56.6 NC_006883.1 + 27720 0.74 0.567531
Target:  5'- gACCuGUcGGACCAGUAGGACCuGaUCc -3'
miRNA:   3'- gUGGuCAuCCUGGUCGUCCUGGuC-AG- -5'
31667 5' -56.6 NC_006883.1 + 27585 0.66 0.926789
Target:  5'- gACCuGgAGGACCuGCuGGACCuGUg -3'
miRNA:   3'- gUGGuCaUCCUGGuCGuCCUGGuCAg -5'
31667 5' -56.6 NC_006883.1 + 27504 0.75 0.519094
Target:  5'- gACCuGUAGGACCugcuggaccuGUAGGACCAGg- -3'
miRNA:   3'- gUGGuCAUCCUGGu---------CGUCCUGGUCag -5'
31667 5' -56.6 NC_006883.1 + 27371 0.66 0.94989
Target:  5'- aACUGGUacuccAGGuCCAGCAGGuccuCCAGg- -3'
miRNA:   3'- gUGGUCA-----UCCuGGUCGUCCu---GGUCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.