miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31668 5' -61.1 NC_006883.1 + 23350 0.66 0.793817
Target:  5'- aCCuaCaGGACCaGuuGGACCUGGAGa -3'
miRNA:   3'- aGGcgGaCCUGGaCcuCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 23251 0.67 0.767857
Target:  5'- aCCaGCa-GGACCaGuuGGACCUGGAGg -3'
miRNA:   3'- aGG-CGgaCCUGGaCcuCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 21902 0.67 0.740946
Target:  5'- gCgGaCCUugcGGACCUGGAGGACCaccagcaGGAc -3'
miRNA:   3'- aGgC-GGA---CCUGGACCUCCUGGa------CCUc -5'
31668 5' -61.1 NC_006883.1 + 26550 0.67 0.7318
Target:  5'- cCUG-CUGGACCUGuAGGACCugcUGGAc -3'
miRNA:   3'- aGGCgGACCUGGACcUCCUGG---ACCUc -5'
31668 5' -61.1 NC_006883.1 + 21715 0.68 0.713287
Target:  5'- gUCCuCCUGGuCCaagUGGAGGuCCUGGu- -3'
miRNA:   3'- -AGGcGGACCuGG---ACCUCCuGGACCuc -5'
31668 5' -61.1 NC_006883.1 + 23293 0.68 0.685084
Target:  5'- aCCGauaCCUggaGGACCUuGAGGACCaGGAGc -3'
miRNA:   3'- aGGC---GGA---CCUGGAcCUCCUGGaCCUC- -5'
31668 5' -61.1 NC_006883.1 + 22030 0.69 0.666078
Target:  5'- aCCGUCUGGACCcGuAGGACCagcaGGAc -3'
miRNA:   3'- aGGCGGACCUGGaCcUCCUGGa---CCUc -5'
31668 5' -61.1 NC_006883.1 + 28578 0.69 0.666078
Target:  5'- aCUGuagcaCCUGaaguuCCUGGuGGACCUGGAGg -3'
miRNA:   3'- aGGC-----GGACcu---GGACCuCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 27005 0.69 0.646975
Target:  5'- aCUGUUUGaaaaccagaACCaGGAGGACCUGGAGa -3'
miRNA:   3'- aGGCGGACc--------UGGaCCUCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 23402 0.69 0.627831
Target:  5'- gUCCagUUGGACCUGuGGGACCUGuGGGa -3'
miRNA:   3'- -AGGcgGACCUGGACcUCCUGGAC-CUC- -5'
31668 5' -61.1 NC_006883.1 + 22132 0.69 0.622088
Target:  5'- aCCaCUUGGACCagcaGGAccaucuccaccacucGGACCUGGAGg -3'
miRNA:   3'- aGGcGGACCUGGa---CCU---------------CCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 28375 0.7 0.599153
Target:  5'- aCCGUCaGcACCaGGAGGuCCUGGAGg -3'
miRNA:   3'- aGGCGGaCcUGGaCCUCCuGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 26728 0.7 0.581078
Target:  5'- aUCUGCUccaucauuuccaggaGGACCUGcuGGACCUGGAGu -3'
miRNA:   3'- -AGGCGGa--------------CCUGGACcuCCUGGACCUC- -5'
31668 5' -61.1 NC_006883.1 + 27594 0.7 0.570664
Target:  5'- uUCCaggaGGACCUGGAGGACCugcUGGAc -3'
miRNA:   3'- -AGGcggaCCUGGACCUCCUGG---ACCUc -5'
31668 5' -61.1 NC_006883.1 + 23698 0.71 0.551852
Target:  5'- aCCagaUGGACCUGGAGGACCagcaGGAc -3'
miRNA:   3'- aGGcggACCUGGACCUCCUGGa---CCUc -5'
31668 5' -61.1 NC_006883.1 + 28102 0.71 0.533233
Target:  5'- aCCagUUGGACCUGGAGGACCagcaGGAc -3'
miRNA:   3'- aGGcgGACCUGGACCUCCUGGa---CCUc -5'
31668 5' -61.1 NC_006883.1 + 27666 0.71 0.524007
Target:  5'- uUCCaggaGGACCUGGAGGACCUgcuggaccuGGAGu -3'
miRNA:   3'- -AGGcggaCCUGGACCUCCUGGA---------CCUC- -5'
31668 5' -61.1 NC_006883.1 + 23140 0.71 0.514842
Target:  5'- aCCagUUGGACCUGGAGcACCUGGAu -3'
miRNA:   3'- aGGcgGACCUGGACCUCcUGGACCUc -5'
31668 5' -61.1 NC_006883.1 + 27493 0.72 0.487759
Target:  5'- cCUG-CUGGACCUGuAGGACCaGGAGc -3'
miRNA:   3'- aGGCgGACCUGGACcUCCUGGaCCUC- -5'
31668 5' -61.1 NC_006883.1 + 23221 0.72 0.444195
Target:  5'- aCCaGCa-GGACCaGGAGGACCaGGAGg -3'
miRNA:   3'- aGG-CGgaCCUGGaCCUCCUGGaCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.