miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31678 3' -56.4 NC_006883.1 + 235930 0.75 0.582657
Target:  5'- aGUgCUGGUGGUGGUgCUUCuGGUUCu -3'
miRNA:   3'- cCAgGAUCACCACCAgGAGGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 222776 0.94 0.049719
Target:  5'- uGGUCCUucuGGUGGUccuguuGGUCCUCCAGGUCCu -3'
miRNA:   3'- -CCAGGA---UCACCA------CCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 222731 0.68 0.914678
Target:  5'- uGGUucgCCUGGUGcaacUGGUCCuguuggaaaUCCuGGUCCu -3'
miRNA:   3'- -CCA---GGAUCACc---ACCAGG---------AGGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 222686 0.71 0.764778
Target:  5'- uGGUCCUgcuGGUGGaacUGGUCCacaagguucaCCuGGUCCu -3'
miRNA:   3'- -CCAGGA---UCACC---ACCAGGa---------GGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 222650 0.79 0.393679
Target:  5'- uGGUCCUGcUGGUccuacuGGUUCUCCuGGUCCu -3'
miRNA:   3'- -CCAGGAUcACCA------CCAGGAGGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 211333 0.69 0.884134
Target:  5'- aGGaUCUUggAGUGGUGGUCCUagaguagcaCCAGGa-- -3'
miRNA:   3'- -CC-AGGA--UCACCACCAGGA---------GGUCCagg -5'
31678 3' -56.4 NC_006883.1 + 211106 0.66 0.956096
Target:  5'- uGG-CUUGGUGGUGGUaagaaaaCUCCAaauuGG-CCa -3'
miRNA:   3'- -CCaGGAUCACCACCAg------GAGGU----CCaGG- -5'
31678 3' -56.4 NC_006883.1 + 175079 0.68 0.908994
Target:  5'- --aCCUagacuaGGUGGUaagggugauaaaGGUCCUuuGGGUCCu -3'
miRNA:   3'- ccaGGA------UCACCA------------CCAGGAggUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 111888 0.69 0.890662
Target:  5'- uGGagCUGGUGGaGGUaCUCCAGGUa- -3'
miRNA:   3'- -CCagGAUCACCaCCAgGAGGUCCAgg -5'
31678 3' -56.4 NC_006883.1 + 28270 0.97 0.031127
Target:  5'- aGGUCCUucaGGUGGaagUGGUCCUCCAGGUCCa -3'
miRNA:   3'- -CCAGGA---UCACC---ACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 28201 0.9 0.085215
Target:  5'- aGGUCCUacuGGUGGagaUGGUCCUCCuGGUCCa -3'
miRNA:   3'- -CCAGGA---UCACC---ACCAGGAGGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 28165 0.76 0.497469
Target:  5'- uGGUUCUGaUGGaggaagUGGUCCUCCAGGaCCu -3'
miRNA:   3'- -CCAGGAUcACC------ACCAGGAGGUCCaGG- -5'
31678 3' -56.4 NC_006883.1 + 28111 0.82 0.25487
Target:  5'- uGGUgCUgacGGUGaugaugggggaaGUGGUCCUCCAGGUCCu -3'
miRNA:   3'- -CCAgGA---UCAC------------CACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 28084 0.76 0.544242
Target:  5'- uGGUCCUGc---UGGUCCUCCAGGaCCu -3'
miRNA:   3'- -CCAGGAUcaccACCAGGAGGUCCaGG- -5'
31678 3' -56.4 NC_006883.1 + 28033 0.91 0.073137
Target:  5'- uGGUCCUAcUGGUgaugauGGUCCUCCAGGUCCu -3'
miRNA:   3'- -CCAGGAUcACCA------CCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 27973 0.97 0.032796
Target:  5'- uGGUCCUacuGGUGGagaUGGUCCUCCAGGUCCa -3'
miRNA:   3'- -CCAGGA---UCACC---ACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 27938 0.66 0.969069
Target:  5'- uGGUgCUauGGUGGaacUGGUCCgaCuGGUCCu -3'
miRNA:   3'- -CCAgGA--UCACC---ACCAGGagGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 27884 0.75 0.602081
Target:  5'- uGGUCCUucaGGUGGaacUGGUCCaaCuGGUCCu -3'
miRNA:   3'- -CCAGGA---UCACC---ACCAGGagGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 27821 0.86 0.158849
Target:  5'- aGGUCCUGc---UGGUCCUCCAGGUCCa -3'
miRNA:   3'- -CCAGGAUcaccACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 27446 0.7 0.843941
Target:  5'- aGGUCCUAcUGGUccgacaGGUCCcacaggaccaacuggUCCcacAGGUCCa -3'
miRNA:   3'- -CCAGGAUcACCA------CCAGG---------------AGG---UCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.