miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31680 3' -49.7 NC_006883.1 + 222787 0.87 0.360591
Target:  5'- -gUGGUCCUGUuGGUCCUcCAGGUCCu -3'
miRNA:   3'- ugACCAGGACAuCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 222746 0.79 0.718072
Target:  5'- aACUGGUCCUGUuggaaauccuGGUCCUaCuGGUCCu -3'
miRNA:   3'- -UGACCAGGACAu---------CCAGGAaGuUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 222683 0.71 0.985296
Target:  5'- uGCUGGUCCUGcugguggaacuGGUCCacaaggUUCAccuGGUCCu -3'
miRNA:   3'- -UGACCAGGACau---------CCAGG------AAGU---UUAGG- -5'
31680 3' -49.7 NC_006883.1 + 222647 0.76 0.85494
Target:  5'- uACUGGUCCUGcuGGUCCUacugguUCuccuGGUCCu -3'
miRNA:   3'- -UGACCAGGACauCCAGGA------AGu---UUAGG- -5'
31680 3' -49.7 NC_006883.1 + 211655 0.73 0.955587
Target:  5'- cCUGGUCCaGgaugAGGUCCUUUAuuaccUCCu -3'
miRNA:   3'- uGACCAGGaCa---UCCAGGAAGUuu---AGG- -5'
31680 3' -49.7 NC_006883.1 + 194335 0.66 0.999781
Target:  5'- uGCUGGUgCUGUAaucaaacaaaauGGUCCUagAaaagcacaacuacccAAUCCa -3'
miRNA:   3'- -UGACCAgGACAU------------CCAGGAagU---------------UUAGG- -5'
31680 3' -49.7 NC_006883.1 + 189408 0.72 0.972249
Target:  5'- aACUGGUUCaGUuGGUUCUUCGGGUgCa -3'
miRNA:   3'- -UGACCAGGaCAuCCAGGAAGUUUAgG- -5'
31680 3' -49.7 NC_006883.1 + 175090 0.66 0.99976
Target:  5'- -gUGGUaaggGUgauaaAGGUCCUUUggGUCCu -3'
miRNA:   3'- ugACCAgga-CA-----UCCAGGAAGuuUAGG- -5'
31680 3' -49.7 NC_006883.1 + 28258 0.8 0.66713
Target:  5'- aACUGGUCCaacAGGUCCUUCAGguggaagugGUCCu -3'
miRNA:   3'- -UGACCAGGacaUCCAGGAAGUU---------UAGG- -5'
31680 3' -49.7 NC_006883.1 + 28182 0.7 0.987278
Target:  5'- -gUGGUCCUccAGGaCCUcCAGGUCCu -3'
miRNA:   3'- ugACCAGGAcaUCCaGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 28137 0.75 0.91088
Target:  5'- -gUGGUCCUccAGGUCCUcCAGGUUCu -3'
miRNA:   3'- ugACCAGGAcaUCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 28125 0.74 0.922515
Target:  5'- gUUGGaCCUGUAGGUCCUgUAGGaCCa -3'
miRNA:   3'- uGACCaGGACAUCCAGGAaGUUUaGG- -5'
31680 3' -49.7 NC_006883.1 + 28081 0.78 0.757527
Target:  5'- aACUGGUCCUGcuGGUCCUcCAGGaccUCCu -3'
miRNA:   3'- -UGACCAGGACauCCAGGAaGUUU---AGG- -5'
31680 3' -49.7 NC_006883.1 + 28050 0.82 0.594817
Target:  5'- -aUGGUCCUccAGGUCCUcCAGGUCCa -3'
miRNA:   3'- ugACCAGGAcaUCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 27970 0.8 0.677413
Target:  5'- uGCUGGUCCUacugGUGgagauGGUCCUcCAGGUCCa -3'
miRNA:   3'- -UGACCAGGA----CAU-----CCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 27872 0.79 0.718072
Target:  5'- aACUGGUCCaacuGGUCCUUCAGguggaacugGUCCa -3'
miRNA:   3'- -UGACCAGGacauCCAGGAAGUU---------UAGG- -5'
31680 3' -49.7 NC_006883.1 + 27845 0.73 0.951581
Target:  5'- aACUGGUCCUacAGGaCCUaCAGGUCCn -3'
miRNA:   3'- -UGACCAGGAcaUCCaGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 27821 0.79 0.728072
Target:  5'- --aGGUCCUGcuGGUCCUcCAGGUCCa -3'
miRNA:   3'- ugaCCAGGACauCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 27733 0.77 0.813128
Target:  5'- gUUGGUCCUGUGGGaCCUgUCGGA-CCa -3'
miRNA:   3'- uGACCAGGACAUCCaGGA-AGUUUaGG- -5'
31680 3' -49.7 NC_006883.1 + 27479 0.7 0.990118
Target:  5'- aACUGGUCCcacAGGUCCaacuGGUCCu -3'
miRNA:   3'- -UGACCAGGacaUCCAGGaaguUUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.