Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31680 | 5' | -59.4 | NC_006883.1 | + | 21459 | 0.85 | 0.093242 |
Target: 5'- aCUGGUCCUGCuGGUCCUcCAGGUCCAa -3' miRNA: 3'- -GACCAGGGUGuCCAGGGuGUCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 21504 | 0.79 | 0.228685 |
Target: 5'- uCUGGUCCUcCAGGUCCUuCuGGUCCAg -3' miRNA: 3'- -GACCAGGGuGUCCAGGGuGuCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 21540 | 0.67 | 0.831324 |
Target: 5'- cCUGGUCCUGCuGG-CCCuCAaggugauguuGGUCCGa -3' miRNA: 3'- -GACCAGGGUGuCCaGGGuGU----------CCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 21585 | 0.74 | 0.419175 |
Target: 5'- cCUGGUCCUACuGGaCCUGCuGGUCCu -3' miRNA: 3'- -GACCAGGGUGuCCaGGGUGuCCAGGu -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 21612 | 0.81 | 0.185193 |
Target: 5'- cCUGGUCCUGCugguGGUCCUcCAGGUCCGc -3' miRNA: 3'- -GACCAGGGUGu---CCAGGGuGUCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 21660 | 0.77 | 0.313122 |
Target: 5'- gCUGGUCCaACAGGUCCaACuGGUCCu -3' miRNA: 3'- -GACCAGGgUGUCCAGGgUGuCCAGGu -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 21702 | 0.85 | 0.098036 |
Target: 5'- cCUGGUCCUGCAGGUCCUcCuGGUCCAa -3' miRNA: 3'- -GACCAGGGUGUCCAGGGuGuCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 21747 | 0.91 | 0.037174 |
Target: 5'- aCUGGUCCUGCuGGUCCUACGGGUCCAg -3' miRNA: 3'- -GACCAGGGUGuCCAGGGUGUCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 21776 | 0.8 | 0.208374 |
Target: 5'- -cGGUCCUACAGGUCCaACuGGUCCu -3' miRNA: 3'- gaCCAGGGUGUCCAGGgUGuCCAGGu -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 21822 | 0.78 | 0.274314 |
Target: 5'- cCUGGUCCaAguGGUCCUcCAGGUCCGa -3' miRNA: 3'- -GACCAGGgUguCCAGGGuGUCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 21859 | 0.7 | 0.688758 |
Target: 5'- aUGGUCCUGCuGGUCCaAguGGUUCAn -3' miRNA: 3'- gACCAGGGUGuCCAGGgUguCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 21885 | 0.78 | 0.262262 |
Target: 5'- cCUGGUCCUcCAGGUCCUAguggugguccucCAGGUCCu -3' miRNA: 3'- -GACCAGGGuGUCCAGGGU------------GUCCAGGu -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 21933 | 0.77 | 0.286805 |
Target: 5'- cCUGGUCCUGCuGGUCCUcCAGGUCa- -3' miRNA: 3'- -GACCAGGGUGuCCAGGGuGUCCAGgu -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 21960 | 0.67 | 0.806874 |
Target: 5'- aUGGUCCaAguGGUCCUcCuGGUCCu -3' miRNA: 3'- gACCAGGgUguCCAGGGuGuCCAGGu -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 22884 | 0.69 | 0.717271 |
Target: 5'- aCUGGUCCUGCuGGUgCUcCAGGUUUAa -3' miRNA: 3'- -GACCAGGGUGuCCAgGGuGUCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 22911 | 0.68 | 0.754335 |
Target: 5'- aCUGGaCCUGCuGGUCCUgauGGUCCAa -3' miRNA: 3'- -GACCaGGGUGuCCAGGGuguCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 22955 | 0.82 | 0.145581 |
Target: 5'- cCUGGUCCUGCugguGGUCCUcCAGGUCCAa -3' miRNA: 3'- -GACCAGGGUGu---CCAGGGuGUCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 23012 | 0.71 | 0.592067 |
Target: 5'- cCUGGUCCUcaAGGUCCUccagguaucGguGGUCCAa -3' miRNA: 3'- -GACCAGGGugUCCAGGG---------UguCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 23059 | 0.74 | 0.419175 |
Target: 5'- -aGGUCCUGCuGGUUCUcCAGGUCCAn -3' miRNA: 3'- gaCCAGGGUGuCCAGGGuGUCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 23084 | 0.77 | 0.293217 |
Target: 5'- aCUGGUCCUGUAGGUCCUucaaaucCAGGUCCAn -3' miRNA: 3'- -GACCAGGGUGUCCAGGGu------GUCCAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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