Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31680 | 5' | -59.4 | NC_006883.1 | + | 23117 | 1.09 | 0.002569 |
Target: 5'- aCUGGUCCCACAGGUCCCACAGGUCCAa -3' miRNA: 3'- -GACCAGGGUGUCCAGGGUGUCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 27453 | 0.93 | 0.030212 |
Target: 5'- aCUGGUCCgACAGGUCCCACAGGaCCAa -3' miRNA: 3'- -GACCAGGgUGUCCAGGGUGUCCaGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 27846 | 0.92 | 0.031822 |
Target: 5'- aCUGGUCCUACAGGaCCUACAGGUCCAa -3' miRNA: 3'- -GACCAGGGUGUCCaGGGUGUCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 26268 | 0.92 | 0.035298 |
Target: 5'- aUGGUCCaGCAGGUCCUACAGGUCCAg -3' miRNA: 3'- gACCAGGgUGUCCAGGGUGUCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 21747 | 0.91 | 0.037174 |
Target: 5'- aCUGGUCCUGCuGGUCCUACGGGUCCAg -3' miRNA: 3'- -GACCAGGGUGuCCAGGGUGUCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 27219 | 0.91 | 0.039147 |
Target: 5'- cCUGGUCCUACAGGUCCaGCAGGUCCu -3' miRNA: 3'- -GACCAGGGUGUCCAGGgUGUCCAGGu -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 23644 | 0.9 | 0.049369 |
Target: 5'- -aGGUCCaGCAGGUCCUACAGGUCCAa -3' miRNA: 3'- gaCCAGGgUGUCCAGGGUGUCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 27480 | 0.88 | 0.060606 |
Target: 5'- aCUGGUCCCACAGGUCCaACuGGUCCu -3' miRNA: 3'- -GACCAGGGUGUCCAGGgUGuCCAGGu -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 23154 | 0.88 | 0.065428 |
Target: 5'- aUGGUCCUACAGGUCCaC-CAGGUCCAg -3' miRNA: 3'- gACCAGGGUGUCCAGG-GuGUCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 23441 | 0.86 | 0.080162 |
Target: 5'- uCUGGUCCaGCAGGUCCUcCAGGUCCAg -3' miRNA: 3'- -GACCAGGgUGUCCAGGGuGUCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 21459 | 0.85 | 0.093242 |
Target: 5'- aCUGGUCCUGCuGGUCCUcCAGGUCCAa -3' miRNA: 3'- -GACCAGGGUGuCCAGGGuGUCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 21702 | 0.85 | 0.098036 |
Target: 5'- cCUGGUCCUGCAGGUCCUcCuGGUCCAa -3' miRNA: 3'- -GACCAGGGUGUCCAGGGuGuCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 26357 | 0.85 | 0.100519 |
Target: 5'- aCUGGUCCUGCuGGUCCCACAgguggaacuGGUCCAa -3' miRNA: 3'- -GACCAGGGUGuCCAGGGUGU---------CCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 28050 | 0.84 | 0.116705 |
Target: 5'- aUGGUCCUcCAGGUCCUcCAGGUCCAg -3' miRNA: 3'- gACCAGGGuGUCCAGGGuGUCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 23414 | 0.84 | 0.119629 |
Target: 5'- cCUGGUCCUGCuGGUCCUcCAGGUCCAn -3' miRNA: 3'- -GACCAGGGUGuCCAGGGuGUCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 26501 | 0.83 | 0.138648 |
Target: 5'- aCUGGUCCUGCAGGUCCaACuGGUCCu -3' miRNA: 3'- -GACCAGGGUGUCCAGGgUGuCCAGGu -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 22955 | 0.82 | 0.145581 |
Target: 5'- cCUGGUCCUGCugguGGUCCUcCAGGUCCAa -3' miRNA: 3'- -GACCAGGGUGu---CCAGGGuGUCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 24739 | 0.82 | 0.156576 |
Target: 5'- -cGGUCCUcCAGGUCCUcCAGGUCCAa -3' miRNA: 3'- gaCCAGGGuGUCCAGGGuGUCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 24685 | 0.81 | 0.164317 |
Target: 5'- -aGGUCCUACAGGUCCaAguGGUCCAu -3' miRNA: 3'- gaCCAGGGUGUCCAGGgUguCCAGGU- -5' |
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31680 | 5' | -59.4 | NC_006883.1 | + | 21612 | 0.81 | 0.185193 |
Target: 5'- cCUGGUCCUGCugguGGUCCUcCAGGUCCGc -3' miRNA: 3'- -GACCAGGGUGu---CCAGGGuGUCCAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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