miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31680 5' -59.4 NC_006883.1 + 21459 0.85 0.093242
Target:  5'- aCUGGUCCUGCuGGUCCUcCAGGUCCAa -3'
miRNA:   3'- -GACCAGGGUGuCCAGGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 21504 0.79 0.228685
Target:  5'- uCUGGUCCUcCAGGUCCUuCuGGUCCAg -3'
miRNA:   3'- -GACCAGGGuGUCCAGGGuGuCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 21540 0.67 0.831324
Target:  5'- cCUGGUCCUGCuGG-CCCuCAaggugauguuGGUCCGa -3'
miRNA:   3'- -GACCAGGGUGuCCaGGGuGU----------CCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 21585 0.74 0.419175
Target:  5'- cCUGGUCCUACuGGaCCUGCuGGUCCu -3'
miRNA:   3'- -GACCAGGGUGuCCaGGGUGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 21612 0.81 0.185193
Target:  5'- cCUGGUCCUGCugguGGUCCUcCAGGUCCGc -3'
miRNA:   3'- -GACCAGGGUGu---CCAGGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 21660 0.77 0.313122
Target:  5'- gCUGGUCCaACAGGUCCaACuGGUCCu -3'
miRNA:   3'- -GACCAGGgUGUCCAGGgUGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 21702 0.85 0.098036
Target:  5'- cCUGGUCCUGCAGGUCCUcCuGGUCCAa -3'
miRNA:   3'- -GACCAGGGUGUCCAGGGuGuCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 21747 0.91 0.037174
Target:  5'- aCUGGUCCUGCuGGUCCUACGGGUCCAg -3'
miRNA:   3'- -GACCAGGGUGuCCAGGGUGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 21776 0.8 0.208374
Target:  5'- -cGGUCCUACAGGUCCaACuGGUCCu -3'
miRNA:   3'- gaCCAGGGUGUCCAGGgUGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 21822 0.78 0.274314
Target:  5'- cCUGGUCCaAguGGUCCUcCAGGUCCGa -3'
miRNA:   3'- -GACCAGGgUguCCAGGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 21859 0.7 0.688758
Target:  5'- aUGGUCCUGCuGGUCCaAguGGUUCAn -3'
miRNA:   3'- gACCAGGGUGuCCAGGgUguCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 21885 0.78 0.262262
Target:  5'- cCUGGUCCUcCAGGUCCUAguggugguccucCAGGUCCu -3'
miRNA:   3'- -GACCAGGGuGUCCAGGGU------------GUCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 21933 0.77 0.286805
Target:  5'- cCUGGUCCUGCuGGUCCUcCAGGUCa- -3'
miRNA:   3'- -GACCAGGGUGuCCAGGGuGUCCAGgu -5'
31680 5' -59.4 NC_006883.1 + 21960 0.67 0.806874
Target:  5'- aUGGUCCaAguGGUCCUcCuGGUCCu -3'
miRNA:   3'- gACCAGGgUguCCAGGGuGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 22884 0.69 0.717271
Target:  5'- aCUGGUCCUGCuGGUgCUcCAGGUUUAa -3'
miRNA:   3'- -GACCAGGGUGuCCAgGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 22911 0.68 0.754335
Target:  5'- aCUGGaCCUGCuGGUCCUgauGGUCCAa -3'
miRNA:   3'- -GACCaGGGUGuCCAGGGuguCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 22955 0.82 0.145581
Target:  5'- cCUGGUCCUGCugguGGUCCUcCAGGUCCAa -3'
miRNA:   3'- -GACCAGGGUGu---CCAGGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 23012 0.71 0.592067
Target:  5'- cCUGGUCCUcaAGGUCCUccagguaucGguGGUCCAa -3'
miRNA:   3'- -GACCAGGGugUCCAGGG---------UguCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 23059 0.74 0.419175
Target:  5'- -aGGUCCUGCuGGUUCUcCAGGUCCAn -3'
miRNA:   3'- gaCCAGGGUGuCCAGGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 23084 0.77 0.293217
Target:  5'- aCUGGUCCUGUAGGUCCUucaaaucCAGGUCCAn -3'
miRNA:   3'- -GACCAGGGUGUCCAGGGu------GUCCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.