miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31680 5' -59.4 NC_006883.1 + 21776 0.8 0.208374
Target:  5'- -cGGUCCUACAGGUCCaACuGGUCCu -3'
miRNA:   3'- gaCCAGGGUGUCCAGGgUGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 26357 0.85 0.100519
Target:  5'- aCUGGUCCUGCuGGUCCCACAgguggaacuGGUCCAa -3'
miRNA:   3'- -GACCAGGGUGuCCAGGGUGU---------CCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 28050 0.84 0.116705
Target:  5'- aUGGUCCUcCAGGUCCUcCAGGUCCAg -3'
miRNA:   3'- gACCAGGGuGUCCAGGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 23414 0.84 0.119629
Target:  5'- cCUGGUCCUGCuGGUCCUcCAGGUCCAn -3'
miRNA:   3'- -GACCAGGGUGuCCAGGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 26501 0.83 0.138648
Target:  5'- aCUGGUCCUGCAGGUCCaACuGGUCCu -3'
miRNA:   3'- -GACCAGGGUGUCCAGGgUGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 22955 0.82 0.145581
Target:  5'- cCUGGUCCUGCugguGGUCCUcCAGGUCCAa -3'
miRNA:   3'- -GACCAGGGUGu---CCAGGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 24739 0.82 0.156576
Target:  5'- -cGGUCCUcCAGGUCCUcCAGGUCCAa -3'
miRNA:   3'- gaCCAGGGuGUCCAGGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 24685 0.81 0.164317
Target:  5'- -aGGUCCUACAGGUCCaAguGGUCCAu -3'
miRNA:   3'- gaCCAGGGUGUCCAGGgUguCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 21612 0.81 0.185193
Target:  5'- cCUGGUCCUGCugguGGUCCUcCAGGUCCGc -3'
miRNA:   3'- -GACCAGGGUGu---CCAGGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 21702 0.85 0.098036
Target:  5'- cCUGGUCCUGCAGGUCCUcCuGGUCCAa -3'
miRNA:   3'- -GACCAGGGUGUCCAGGGuGuCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 21459 0.85 0.093242
Target:  5'- aCUGGUCCUGCuGGUCCUcCAGGUCCAa -3'
miRNA:   3'- -GACCAGGGUGuCCAGGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 23441 0.86 0.080162
Target:  5'- uCUGGUCCaGCAGGUCCUcCAGGUCCAg -3'
miRNA:   3'- -GACCAGGgUGUCCAGGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 27453 0.93 0.030212
Target:  5'- aCUGGUCCgACAGGUCCCACAGGaCCAa -3'
miRNA:   3'- -GACCAGGgUGUCCAGGGUGUCCaGGU- -5'
31680 5' -59.4 NC_006883.1 + 27846 0.92 0.031822
Target:  5'- aCUGGUCCUACAGGaCCUACAGGUCCAa -3'
miRNA:   3'- -GACCAGGGUGUCCaGGGUGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 26268 0.92 0.035298
Target:  5'- aUGGUCCaGCAGGUCCUACAGGUCCAg -3'
miRNA:   3'- gACCAGGgUGUCCAGGGUGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 21747 0.91 0.037174
Target:  5'- aCUGGUCCUGCuGGUCCUACGGGUCCAg -3'
miRNA:   3'- -GACCAGGGUGuCCAGGGUGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 27219 0.91 0.039147
Target:  5'- cCUGGUCCUACAGGUCCaGCAGGUCCu -3'
miRNA:   3'- -GACCAGGGUGUCCAGGgUGUCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 23644 0.9 0.049369
Target:  5'- -aGGUCCaGCAGGUCCUACAGGUCCAa -3'
miRNA:   3'- gaCCAGGgUGUCCAGGGUGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 27480 0.88 0.060606
Target:  5'- aCUGGUCCCACAGGUCCaACuGGUCCu -3'
miRNA:   3'- -GACCAGGGUGUCCAGGgUGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 23154 0.88 0.065428
Target:  5'- aUGGUCCUACAGGUCCaC-CAGGUCCAg -3'
miRNA:   3'- gACCAGGGUGUCCAGG-GuGUCCAGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.