miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31681 3' -58.2 NC_006883.1 + 28133 0.66 0.925542
Target:  5'- -uUGGaccaguUGGACCUguaGGUCCUGUaGGaCCa -3'
miRNA:   3'- ccACC------ACCUGGA---CCAGGACGaCCaGG- -5'
31681 3' -58.2 NC_006883.1 + 26792 0.68 0.849498
Target:  5'- -cUGGUGGACCagcaggaccaguUGGaCCUGCaGGaCCa -3'
miRNA:   3'- ccACCACCUGG------------ACCaGGACGaCCaGG- -5'
31681 3' -58.2 NC_006883.1 + 28559 0.68 0.834143
Target:  5'- -cUGGUGGACCUGGaggaccacuUCCaccugaaggaccUGUUGGaCCa -3'
miRNA:   3'- ccACCACCUGGACC---------AGG------------ACGACCaGG- -5'
31681 3' -58.2 NC_006883.1 + 27662 0.73 0.567075
Target:  5'- --aGGaGGACCUGGaggaCCUGCUGGaCCu -3'
miRNA:   3'- ccaCCaCCUGGACCa---GGACGACCaGG- -5'
31681 3' -58.2 NC_006883.1 + 186910 0.71 0.71139
Target:  5'- aGGUGGUGGACa---UUCUaCUGGUCCu -3'
miRNA:   3'- -CCACCACCUGgaccAGGAcGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 26557 0.68 0.856914
Target:  5'- aGGaGGaccugcUGGACCUguaGGaCCUGCUGGaCCa -3'
miRNA:   3'- -CCaCC------ACCUGGA---CCaGGACGACCaGG- -5'
31681 3' -58.2 NC_006883.1 + 23426 0.71 0.663576
Target:  5'- -cUGGUGGACCuguaggaccaucUGGUCCaGUUGGaCCu -3'
miRNA:   3'- ccACCACCUGG------------ACCAGGaCGACCaGG- -5'
31681 3' -58.2 NC_006883.1 + 23731 0.73 0.586237
Target:  5'- aGGaGGaccugcUGGACCUGGaggaCCUGCUGGaCCa -3'
miRNA:   3'- -CCaCC------ACCUGGACCa---GGACGACCaGG- -5'
31681 3' -58.2 NC_006883.1 + 27590 0.73 0.567075
Target:  5'- --aGGaGGACCUGGaggaCCUGCUGGaCCu -3'
miRNA:   3'- ccaCCaCCUGGACCa---GGACGACCaGG- -5'
31681 3' -58.2 NC_006883.1 + 23929 0.67 0.884706
Target:  5'- -uUGGaccaguUGGACCUguaGGaCCUGCUGGaCCu -3'
miRNA:   3'- ccACC------ACCUGGA---CCaGGACGACCaGG- -5'
31681 3' -58.2 NC_006883.1 + 27510 0.67 0.891164
Target:  5'- -cUGaUGGACCUguaGGaCCUGCUGGaCCu -3'
miRNA:   3'- ccACcACCUGGA---CCaGGACGACCaGG- -5'
31681 3' -58.2 NC_006883.1 + 222640 0.78 0.316121
Target:  5'- -cUGGUacuaCUGGUCCUGCUGGUCCu -3'
miRNA:   3'- ccACCAccugGACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 27893 0.8 0.253239
Target:  5'- aGGUGGaacUGGuccaaCUGGUCCUGCUGGUgCu -3'
miRNA:   3'- -CCACC---ACCug---GACCAGGACGACCAgG- -5'
31681 3' -58.2 NC_006883.1 + 23038 0.81 0.231118
Target:  5'- cGGUGGUccaacuGGuCCUcaaGGUCCUGCUGGUUCu -3'
miRNA:   3'- -CCACCA------CCuGGA---CCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21729 0.82 0.201012
Target:  5'- aGUGGagguccUGGuccaaCUGGUCCUGCUGGUCCu -3'
miRNA:   3'- cCACC------ACCug---GACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 27436 0.82 0.196339
Target:  5'- -aUGGUGGAUCaGGUCCUaCUGGUCCg -3'
miRNA:   3'- ccACCACCUGGaCCAGGAcGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 35564 0.83 0.16227
Target:  5'- uGGUGGUGGugUUGGUaUUGCUGGUCa -3'
miRNA:   3'- -CCACCACCugGACCAgGACGACCAGg -5'
31681 3' -58.2 NC_006883.1 + 27945 0.89 0.073405
Target:  5'- -aUGGUGGAacugguccgaCUGGUCCUGCUGGUCCu -3'
miRNA:   3'- ccACCACCUg---------GACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21576 0.9 0.06465
Target:  5'- aGUGGUGGuCCUGGUCCuacuggaccUGCUGGUCCu -3'
miRNA:   3'- cCACCACCuGGACCAGG---------ACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21446 0.98 0.019708
Target:  5'- cGGUGGUGGuccuaCUGGUCCUGCUGGUCCu -3'
miRNA:   3'- -CCACCACCug---GACCAGGACGACCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.