miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31683 3' -55.4 NC_006883.1 + 222950 0.67 0.958501
Target:  5'- aCCaGCAGGaCCaGCAGGACCAGgaGa -3'
miRNA:   3'- -GGcUGUCCaGGgUGUCCUGGUUgaCc -5'
31683 3' -55.4 NC_006883.1 + 162720 0.7 0.875
Target:  5'- uCUGGCAGGUgCUcCAGGAUCAGCa-- -3'
miRNA:   3'- -GGCUGUCCAgGGuGUCCUGGUUGacc -5'
31683 3' -55.4 NC_006883.1 + 28366 0.74 0.714837
Target:  5'- aCCaGgAGGUCCUGgAGGACCAGCaGGa -3'
miRNA:   3'- -GGcUgUCCAGGGUgUCCUGGUUGaCC- -5'
31683 3' -55.4 NC_006883.1 + 28246 0.7 0.894823
Target:  5'- uCCGACuGGUCCaACuGGuCCAACaGGu -3'
miRNA:   3'- -GGCUGuCCAGGgUGuCCuGGUUGaCC- -5'
31683 3' -55.4 NC_006883.1 + 28183 0.68 0.947034
Target:  5'- uCCGuCAGcaCCaGCAGGACCAGUUGGa -3'
miRNA:   3'- -GGCuGUCcaGGgUGUCCUGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 28119 0.72 0.805413
Target:  5'- cCUG-UAGGUCCUGUAGGACCAGUUGGa -3'
miRNA:   3'- -GGCuGUCCAGGGUGUCCUGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 28087 0.72 0.788198
Target:  5'- uCCuGCuGGUCCUcCAGGACCucCUGGu -3'
miRNA:   3'- -GGcUGuCCAGGGuGUCCUGGuuGACC- -5'
31683 3' -55.4 NC_006883.1 + 28054 0.68 0.954887
Target:  5'- uCCucCAGGUCCUcCAGGuCCAggcggaACUGGn -3'
miRNA:   3'- -GGcuGUCCAGGGuGUCCuGGU------UGACC- -5'
31683 3' -55.4 NC_006883.1 + 27988 0.72 0.822055
Target:  5'- -aGAU-GGUCCUcCAGGuCCAACUGGu -3'
miRNA:   3'- ggCUGuCCAGGGuGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 27958 0.76 0.56916
Target:  5'- uCCGACuGGUCCUGCuGGuCCuACUGGu -3'
miRNA:   3'- -GGCUGuCCAGGGUGuCCuGGuUGACC- -5'
31683 3' -55.4 NC_006883.1 + 27878 0.67 0.970963
Target:  5'- uCCaACuGGUCCUuCAGGuggaacugguCCAACUGGu -3'
miRNA:   3'- -GGcUGuCCAGGGuGUCCu---------GGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 27851 0.8 0.390262
Target:  5'- uCCuACAGGaCCUACAGGuCCAACUGGu -3'
miRNA:   3'- -GGcUGUCCaGGGUGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 27824 0.74 0.714837
Target:  5'- uCCuGCuGGUCCUcCAGGuCCAACUGGn -3'
miRNA:   3'- -GGcUGuCCAGGGuGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 27483 0.73 0.75229
Target:  5'- ------nGUCCCACAGGuCCAACUGGu -3'
miRNA:   3'- ggcugucCAGGGUGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 27458 1.12 0.004704
Target:  5'- uCCGACAGGUCCCACAGGACCAACUGGu -3'
miRNA:   3'- -GGCUGUCCAGGGUGUCCUGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 27386 0.72 0.779394
Target:  5'- uCCaGCAGGUCCUcCAGGuCCucCUGGa -3'
miRNA:   3'- -GGcUGUCCAGGGuGUCCuGGuuGACC- -5'
31683 3' -55.4 NC_006883.1 + 27314 0.72 0.779394
Target:  5'- uCCaGCAGGUCCUcCAGGuCCucCUGGa -3'
miRNA:   3'- -GGcUGUCCAGGGuGUCCuGGuuGACC- -5'
31683 3' -55.4 NC_006883.1 + 27233 0.74 0.714837
Target:  5'- uCCaGCAGGUCCUACAGGuCCAuCaGGu -3'
miRNA:   3'- -GGcUGUCCAGGGUGUCCuGGUuGaCC- -5'
31683 3' -55.4 NC_006883.1 + 26524 0.71 0.838066
Target:  5'- uCCuGCuGGUCCaC-CAGGuCCAACUGGu -3'
miRNA:   3'- -GGcUGuCCAGG-GuGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 26498 0.77 0.549955
Target:  5'- gCaACuGGUCCUGCAGGuCCAACUGGu -3'
miRNA:   3'- gGcUGuCCAGGGUGUCCuGGUUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.