Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31684 | 3' | -52.9 | NC_006883.1 | + | 23718 | 0.66 | 0.99158 |
Target: 5'- gGACCUGgAGGaCCuGCUGGaCCAGa- -3' miRNA: 3'- -CUGGAUgUCCaGGuUGACCaGGUUga -5' |
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31684 | 3' | -52.9 | NC_006883.1 | + | 23352 | 0.7 | 0.92554 |
Target: 5'- gGACCUACAGGaCCAGuuggacCUGGagaaCCAGCa -3' miRNA: 3'- -CUGGAUGUCCaGGUU------GACCa---GGUUGa -5' |
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31684 | 3' | -52.9 | NC_006883.1 | + | 23421 | 0.73 | 0.819945 |
Target: 5'- gGACCUGUAGGaCCAuCUGGUCCAGu- -3' miRNA: 3'- -CUGGAUGUCCaGGUuGACCAGGUUga -5' |
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31684 | 3' | -52.9 | NC_006883.1 | + | 23918 | 0.67 | 0.98046 |
Target: 5'- gGACCUGUAGGaCCuGCUGGaccuguugaUCCAACa -3' miRNA: 3'- -CUGGAUGUCCaGGuUGACC---------AGGUUGa -5' |
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31684 | 3' | -52.9 | NC_006883.1 | + | 26769 | 0.7 | 0.92554 |
Target: 5'- gGACCUGCAGGaCCAGUUGcaCCAGCa -3' miRNA: 3'- -CUGGAUGUCCaGGUUGACcaGGUUGa -5' |
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31684 | 3' | -52.9 | NC_006883.1 | + | 23178 | 0.72 | 0.87523 |
Target: 5'- gGACCaGCAGGUCCAGuuaaacCUGGagcaCCAGCa -3' miRNA: 3'- -CUGGaUGUCCAGGUU------GACCa---GGUUGa -5' |
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31684 | 3' | -52.9 | NC_006883.1 | + | 21969 | 0.67 | 0.982504 |
Target: 5'- gGACCUGCAGGaCCAGgaGaUCCAGu- -3' miRNA: 3'- -CUGGAUGUCCaGGUUgaCcAGGUUga -5' |
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31684 | 3' | -52.9 | NC_006883.1 | + | 21862 | 0.66 | 0.990406 |
Target: 5'- gGACCaGCAGGUCCAGuaGGaCCAGg- -3' miRNA: 3'- -CUGGaUGUCCAGGUUgaCCaGGUUga -5' |
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31684 | 3' | -52.9 | NC_006883.1 | + | 26533 | 0.79 | 0.497122 |
Target: 5'- -uCCacCAGGUCCAACUGGUCCuGCUg -3' miRNA: 3'- cuGGauGUCCAGGUUGACCAGGuUGA- -5' |
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31684 | 3' | -52.9 | NC_006883.1 | + | 22914 | 0.78 | 0.565895 |
Target: 5'- gGACCUGCuGGUCCugaUGGUCCAAgUg -3' miRNA: 3'- -CUGGAUGuCCAGGuugACCAGGUUgA- -5' |
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31684 | 3' | -52.9 | NC_006883.1 | + | 27224 | 0.83 | 0.341344 |
Target: 5'- -uCCUACAGGUCCAGCaGGUCCuACa -3' miRNA: 3'- cuGGAUGUCCAGGUUGaCCAGGuUGa -5' |
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31684 | 3' | -52.9 | NC_006883.1 | + | 21707 | 0.83 | 0.341344 |
Target: 5'- -uCCUGCAGGUCCucCUGGUCCAAgUg -3' miRNA: 3'- cuGGAUGUCCAGGuuGACCAGGUUgA- -5' |
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31684 | 3' | -52.9 | NC_006883.1 | + | 21597 | 0.83 | 0.333788 |
Target: 5'- gGACCUGCuGGUCCucCUGGUCCuGCUg -3' miRNA: 3'- -CUGGAUGuCCAGGuuGACCAGGuUGA- -5' |
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31684 | 3' | -52.9 | NC_006883.1 | + | 28246 | 0.83 | 0.319048 |
Target: 5'- -uCCgACuGGUCCAACUGGUCCAACa -3' miRNA: 3'- cuGGaUGuCCAGGUUGACCAGGUUGa -5' |
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31684 | 3' | -52.9 | NC_006883.1 | + | 23411 | 0.84 | 0.300623 |
Target: 5'- gGACCUGguccugcugguccucCAGGUCCAuCUGGUCCAGCa -3' miRNA: 3'- -CUGGAU---------------GUCCAGGUuGACCAGGUUGa -5' |
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31684 | 3' | -52.9 | NC_006883.1 | + | 24688 | 0.84 | 0.297863 |
Target: 5'- -uCCUACAGGUCCAAgUGGUCCAu-- -3' miRNA: 3'- cuGGAUGUCCAGGUUgACCAGGUuga -5' |
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31684 | 3' | -52.9 | NC_006883.1 | + | 27485 | 0.85 | 0.252713 |
Target: 5'- -uCCcACAGGUCCAACUGGUCCuGCUg -3' miRNA: 3'- cuGGaUGUCCAGGUUGACCAGGuUGA- -5' |
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31684 | 3' | -52.9 | NC_006883.1 | + | 22869 | 0.86 | 0.235154 |
Target: 5'- gGugCUcCAGGUCCAACUGGUCCuGCUg -3' miRNA: 3'- -CugGAuGUCCAGGUUGACCAGGuUGA- -5' |
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31684 | 3' | -52.9 | NC_006883.1 | + | 26342 | 0.86 | 0.229532 |
Target: 5'- gGugCaACAGGUCCAACUGGUCCuGCUg -3' miRNA: 3'- -CugGaUGUCCAGGUUGACCAGGuUGA- -5' |
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31684 | 3' | -52.9 | NC_006883.1 | + | 21779 | 0.94 | 0.080358 |
Target: 5'- -uCCUACAGGUCCAACUGGUCCuGCUg -3' miRNA: 3'- cuGGAUGUCCAGGUUGACCAGGuUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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