Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31720 | 3' | -52.2 | NC_006938.1 | + | 23755 | 0.67 | 0.836786 |
Target: 5'- cGUc-CCGGagGGUCAGACGGa-GGGCCg -3' miRNA: 3'- uCAucGGCU--UCAGUUUGCUgaCCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 34262 | 0.69 | 0.759087 |
Target: 5'- --aGGCgGAGGUCAAcgaGCcGCaGGGCCa -3' miRNA: 3'- ucaUCGgCUUCAGUU---UGcUGaCCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 52376 | 0.69 | 0.760123 |
Target: 5'- gGGUcAGCCGAGGcgAGACGAUcgacgucaacccacgGGGCCa -3' miRNA: 3'- -UCA-UCGGCUUCagUUUGCUGa--------------CCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 6111 | 0.69 | 0.76836 |
Target: 5'- -cUGGCCGAGG-CAuggGGCGACUaugccggagccacGGGCUa -3' miRNA: 3'- ucAUCGGCUUCaGU---UUGCUGA-------------CCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 30843 | 0.69 | 0.769383 |
Target: 5'- aGGUcGCCGAGGUCucuGGgGcACUGGccGCCg -3' miRNA: 3'- -UCAuCGGCUUCAGu--UUgC-UGACC--CGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 24650 | 0.68 | 0.779536 |
Target: 5'- --cGGCaUGAAGUUcaaGAugGACcGGGCCa -3' miRNA: 3'- ucaUCG-GCUUCAG---UUugCUGaCCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 23671 | 0.68 | 0.809012 |
Target: 5'- cGU-GCCGAAG-CAGcGCGACgucGGCCa -3' miRNA: 3'- uCAuCGGCUUCaGUU-UGCUGac-CCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 41832 | 0.68 | 0.827734 |
Target: 5'- --gGGCCGAcGGUCAAcacCGGCUcugucGGGCUg -3' miRNA: 3'- ucaUCGGCU-UCAGUUu--GCUGA-----CCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 17050 | 0.68 | 0.827734 |
Target: 5'- gAGcGGCCGAGGUCAucgAGCaGCUGGcauuCCa -3' miRNA: 3'- -UCaUCGGCUUCAGU---UUGcUGACCc---GG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 21128 | 0.69 | 0.738107 |
Target: 5'- -cUGGCUGGAGUCccGCG-C-GGGCCa -3' miRNA: 3'- ucAUCGGCUUCAGuuUGCuGaCCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 17632 | 0.69 | 0.738107 |
Target: 5'- gAGcUGGUCGGAGcCAaccucggcuacGACcugGACUGGGCCu -3' miRNA: 3'- -UC-AUCGGCUUCaGU-----------UUG---CUGACCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 54694 | 0.69 | 0.735984 |
Target: 5'- cGUGGUCugGGAGUCAGGCGACaacaauggauuGGCCa -3' miRNA: 3'- uCAUCGG--CUUCAGUUUGCUGac---------CCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 46073 | 0.74 | 0.487529 |
Target: 5'- uGGUGGCCcAGG-CAGACGGCacGGCCg -3' miRNA: 3'- -UCAUCGGcUUCaGUUUGCUGacCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 51906 | 0.72 | 0.566599 |
Target: 5'- cAGUGGCgCugcagcagacgcucuGggGUCAGGCGGCggUGGGCUc -3' miRNA: 3'- -UCAUCG-G---------------CuuCAGUUUGCUG--ACCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 33076 | 0.71 | 0.628537 |
Target: 5'- gGGUGGCCG-AGUgGuAUGGCUGGcGCa -3' miRNA: 3'- -UCAUCGGCuUCAgUuUGCUGACC-CGg -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 6002 | 0.71 | 0.639656 |
Target: 5'- uGUAGCCGAAGUgAAgucGgGAUgagGGGCg -3' miRNA: 3'- uCAUCGGCUUCAgUU---UgCUGa--CCCGg -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 28657 | 0.71 | 0.661864 |
Target: 5'- cGUGGCUGGAGcUCcgucGCGGCUGGGa- -3' miRNA: 3'- uCAUCGGCUUC-AGuu--UGCUGACCCgg -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 32868 | 0.7 | 0.70585 |
Target: 5'- cGUGGCCGGuggcauGUUugacGACGugUGGGaCCc -3' miRNA: 3'- uCAUCGGCUu-----CAGu---UUGCugACCC-GG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 26924 | 0.7 | 0.716692 |
Target: 5'- aAGUGGaCCGgcG-CGGcccgUGACUGGGCCu -3' miRNA: 3'- -UCAUC-GGCuuCaGUUu---GCUGACCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 2874 | 0.69 | 0.727448 |
Target: 5'- ----uCCGAGGUC--GCGACUggcGGGCCg -3' miRNA: 3'- ucaucGGCUUCAGuuUGCUGA---CCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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