miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31720 5' -59.1 NC_006938.1 + 60038 0.66 0.578153
Target:  5'- cCCGGCcuugccgCCGUgGUaCCAgGCCG-CGUCg -3'
miRNA:   3'- -GGCCGa------GGCAgCG-GGUgUGGCaGUAG- -5'
31720 5' -59.1 NC_006938.1 + 4988 0.66 0.567773
Target:  5'- cCCGGCcaUCCacgagCGCCC-CACCGaugcgCGUCc -3'
miRNA:   3'- -GGCCG--AGGca---GCGGGuGUGGCa----GUAG- -5'
31720 5' -59.1 NC_006938.1 + 3401 0.66 0.561568
Target:  5'- aCCGGCUCCGgCGacaauggucgucugcCCCGCGCCcaccuGUCuagCg -3'
miRNA:   3'- -GGCCGAGGCaGC---------------GGGUGUGG-----CAGua-G- -5'
31720 5' -59.1 NC_006938.1 + 58794 0.66 0.557441
Target:  5'- cUCGGCgaCUGaacCGCgUACACCGUCAUUc -3'
miRNA:   3'- -GGCCGa-GGCa--GCGgGUGUGGCAGUAG- -5'
31720 5' -59.1 NC_006938.1 + 15960 0.67 0.547163
Target:  5'- -aGGC-CCGaUCGCCgACGCgGUCGa- -3'
miRNA:   3'- ggCCGaGGC-AGCGGgUGUGgCAGUag -5'
31720 5' -59.1 NC_006938.1 + 43145 0.67 0.547163
Target:  5'- aUCGGCUCCGUgGCUCcgacagACACgGugcgguucuUCGUCa -3'
miRNA:   3'- -GGCCGAGGCAgCGGG------UGUGgC---------AGUAG- -5'
31720 5' -59.1 NC_006938.1 + 57442 0.67 0.546138
Target:  5'- gUGGCUCCGgcauagUCGCCCcaugccucggccaGgGCCGUC-UCu -3'
miRNA:   3'- gGCCGAGGC------AGCGGG-------------UgUGGCAGuAG- -5'
31720 5' -59.1 NC_006938.1 + 44742 0.67 0.526795
Target:  5'- gCCGcGCgcccUCGUCGCCCGCgACCacCAUCu -3'
miRNA:   3'- -GGC-CGa---GGCAGCGGGUG-UGGcaGUAG- -5'
31720 5' -59.1 NC_006938.1 + 41148 0.67 0.526795
Target:  5'- gCUGGCUCCuUCGCCgCGCgggACCGa-GUCa -3'
miRNA:   3'- -GGCCGAGGcAGCGG-GUG---UGGCagUAG- -5'
31720 5' -59.1 NC_006938.1 + 55458 0.67 0.526795
Target:  5'- aUCGGgUCCGUCGUCggCACACUGcUCuUCc -3'
miRNA:   3'- -GGCCgAGGCAGCGG--GUGUGGC-AGuAG- -5'
31720 5' -59.1 NC_006938.1 + 55258 0.67 0.526795
Target:  5'- aUCGGCagUCUGUcauucaCGCCCACGCCacccggcgcaagGUCAUUc -3'
miRNA:   3'- -GGCCG--AGGCA------GCGGGUGUGG------------CAGUAG- -5'
31720 5' -59.1 NC_006938.1 + 43810 0.67 0.516718
Target:  5'- cCCGGUugUCCaG-CGCCUuccGCACCG-CGUCg -3'
miRNA:   3'- -GGCCG--AGG-CaGCGGG---UGUGGCaGUAG- -5'
31720 5' -59.1 NC_006938.1 + 53507 0.67 0.513709
Target:  5'- aCCGGCUCgaugccagaggacaCGUUGUCC--GCCGUCAg- -3'
miRNA:   3'- -GGCCGAG--------------GCAGCGGGugUGGCAGUag -5'
31720 5' -59.1 NC_006938.1 + 38141 0.68 0.458066
Target:  5'- aCCGGCU-CGUCGCCgAUguaGCCGUgGc- -3'
miRNA:   3'- -GGCCGAgGCAGCGGgUG---UGGCAgUag -5'
31720 5' -59.1 NC_006938.1 + 39875 0.68 0.439312
Target:  5'- cUCGGCcaUGcCGCCCugGCCGaCGUCg -3'
miRNA:   3'- -GGCCGagGCaGCGGGugUGGCaGUAG- -5'
31720 5' -59.1 NC_006938.1 + 48413 0.69 0.412024
Target:  5'- aCCGGCUCCGgagcgacgacCGCCC-CuCCGUUccggGUCu -3'
miRNA:   3'- -GGCCGAGGCa---------GCGGGuGuGGCAG----UAG- -5'
31720 5' -59.1 NC_006938.1 + 45162 0.69 0.403163
Target:  5'- gCgGGCUCCcuuggUGCCCuuGCCGUUGUCc -3'
miRNA:   3'- -GgCCGAGGca---GCGGGugUGGCAGUAG- -5'
31720 5' -59.1 NC_006938.1 + 37866 0.7 0.369787
Target:  5'- uCUGGCUCCaGgagauccaggagaagCGCCCACACUGguggcccgCGUCu -3'
miRNA:   3'- -GGCCGAGG-Ca--------------GCGGGUGUGGCa-------GUAG- -5'
31720 5' -59.1 NC_006938.1 + 41847 0.7 0.368956
Target:  5'- aCCGGCUCUGUCggGCUgGaguuGCCGUCGcUCa -3'
miRNA:   3'- -GGCCGAGGCAG--CGGgUg---UGGCAGU-AG- -5'
31720 5' -59.1 NC_006938.1 + 55897 0.7 0.352614
Target:  5'- -gGGCUCCGgccaggUGCCCggACACCGUggccucugcuaCAUCg -3'
miRNA:   3'- ggCCGAGGCa-----GCGGG--UGUGGCA-----------GUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.