miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31724 5' -57.9 NC_006938.1 + 28045 0.67 0.589846
Target:  5'- gUCCCUCuccguGGCGUCGAggaucucgaagAUGCGCuGGCGCa -3'
miRNA:   3'- -AGGGAG-----CUGCGGCU-----------UGUGCGcCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 8287 0.67 0.568805
Target:  5'- -aCCUUG-CGCCgGGugGCGUGGGCGu -3'
miRNA:   3'- agGGAGCuGCGG-CUugUGCGCCUGUg -5'
31724 5' -57.9 NC_006938.1 + 44957 0.67 0.568805
Target:  5'- -aCUUCuGCGCCGccucgGACGCGCcGGGCAUg -3'
miRNA:   3'- agGGAGcUGCGGC-----UUGUGCG-CCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 48001 0.67 0.565665
Target:  5'- cUCCCUCGccgccuccggcaucACGCucgacaagaccuCGGGCgGCGCGGACGg -3'
miRNA:   3'- -AGGGAGC--------------UGCG------------GCUUG-UGCGCCUGUg -5'
31724 5' -57.9 NC_006938.1 + 30243 0.67 0.558353
Target:  5'- cUUCCUCGAC-CCG-GCGCGCuugucGGCGCg -3'
miRNA:   3'- -AGGGAGCUGcGGCuUGUGCGc----CUGUG- -5'
31724 5' -57.9 NC_006938.1 + 9161 0.67 0.558353
Target:  5'- -gCCUCGACuCCGGcCGCGacaGGugGCg -3'
miRNA:   3'- agGGAGCUGcGGCUuGUGCg--CCugUG- -5'
31724 5' -57.9 NC_006938.1 + 57257 0.67 0.547956
Target:  5'- cCCaCUCGACGaaGAcacGCugGCGaGCACa -3'
miRNA:   3'- aGG-GAGCUGCggCU---UGugCGCcUGUG- -5'
31724 5' -57.9 NC_006938.1 + 8462 0.67 0.547956
Target:  5'- aUCCaucaggUCGGCG-CGGAUACGCGGugGg -3'
miRNA:   3'- -AGGg-----AGCUGCgGCUUGUGCGCCugUg -5'
31724 5' -57.9 NC_006938.1 + 12266 0.68 0.537621
Target:  5'- gCCUgcacggUCGugG-CGAGCugGCGGAaCGCg -3'
miRNA:   3'- aGGG------AGCugCgGCUUGugCGCCU-GUG- -5'
31724 5' -57.9 NC_006938.1 + 14002 0.68 0.527354
Target:  5'- -aCCUUGACacgGUCGAGCACGUcGGCAUa -3'
miRNA:   3'- agGGAGCUG---CGGCUUGUGCGcCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 8216 0.68 0.517161
Target:  5'- cUCCCg-GAUaGCgGAACGCGUGGAC-Cg -3'
miRNA:   3'- -AGGGagCUG-CGgCUUGUGCGCCUGuG- -5'
31724 5' -57.9 NC_006938.1 + 62293 0.68 0.517161
Target:  5'- -gCUUCGACGC---GCAgGUGGACACg -3'
miRNA:   3'- agGGAGCUGCGgcuUGUgCGCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 56749 0.68 0.517161
Target:  5'- gCCCUCGGCcuuGUCG-AC-CGUGGACAg -3'
miRNA:   3'- aGGGAGCUG---CGGCuUGuGCGCCUGUg -5'
31724 5' -57.9 NC_006938.1 + 36396 0.68 0.517161
Target:  5'- -gCCUCGACGU--GGCGCGCcaucgucugauGGACGCa -3'
miRNA:   3'- agGGAGCUGCGgcUUGUGCG-----------CCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 53102 0.68 0.507047
Target:  5'- gCCCUUGACaucacgGCgGAGUggGCGGACGCa -3'
miRNA:   3'- aGGGAGCUG------CGgCUUGugCGCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 10181 0.68 0.507047
Target:  5'- -aCCUCGGaccaggucacgGCCGAggaGCACGUGGACGu -3'
miRNA:   3'- agGGAGCUg----------CGGCU---UGUGCGCCUGUg -5'
31724 5' -57.9 NC_006938.1 + 40106 0.68 0.497019
Target:  5'- cUUCCUCGACGCgGAcaGCGC-CGGuCAg -3'
miRNA:   3'- -AGGGAGCUGCGgCU--UGUGcGCCuGUg -5'
31724 5' -57.9 NC_006938.1 + 26816 0.68 0.497019
Target:  5'- aCUCUCGugGCCGucaAgGCGGuCAUg -3'
miRNA:   3'- aGGGAGCugCGGCuugUgCGCCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 3361 0.68 0.497019
Target:  5'- gCCCUC-ACGCaguGGCAgGCGGGCAUc -3'
miRNA:   3'- aGGGAGcUGCGgc-UUGUgCGCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 44616 0.69 0.468463
Target:  5'- cUCCCaucuugaagcggcagCGACgGCCGAGCAgCGUGGugAUg -3'
miRNA:   3'- -AGGGa--------------GCUG-CGGCUUGU-GCGCCugUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.