miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31724 5' -57.9 NC_006938.1 + 23653 0.66 0.63226
Target:  5'- cCCCaCGA-GCCGAACGCgagcgucuccGUGGugGCg -3'
miRNA:   3'- aGGGaGCUgCGGCUUGUG----------CGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 25325 0.66 0.642885
Target:  5'- gCCCgaacggUCGACugguccgaGCCGggUcuGCGCGuGACGCg -3'
miRNA:   3'- aGGG------AGCUG--------CGGCuuG--UGCGC-CUGUG- -5'
31724 5' -57.9 NC_006938.1 + 26816 0.68 0.497019
Target:  5'- aCUCUCGugGCCGucaAgGCGGuCAUg -3'
miRNA:   3'- aGGGAGCugCGGCuugUgCGCCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 27279 0.66 0.63226
Target:  5'- gUCCUuccagCGGCGCUGGuCA-GCGGugGCa -3'
miRNA:   3'- -AGGGa----GCUGCGGCUuGUgCGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 28045 0.67 0.589846
Target:  5'- gUCCCUCuccguGGCGUCGAggaucucgaagAUGCGCuGGCGCa -3'
miRNA:   3'- -AGGGAG-----CUGCGGCU-----------UGUGCGcCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 29322 0.66 0.611019
Target:  5'- -gCCUCGcCGaggaUGAGCACGCGG-UACu -3'
miRNA:   3'- agGGAGCuGCg---GCUUGUGCGCCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 30243 0.67 0.558353
Target:  5'- cUUCCUCGAC-CCG-GCGCGCuugucGGCGCg -3'
miRNA:   3'- -AGGGAGCUGcGGCuUGUGCGc----CUGUG- -5'
31724 5' -57.9 NC_006938.1 + 34929 0.7 0.411328
Target:  5'- aCUgUCGugGUCGAGCACccaGCGGGCc- -3'
miRNA:   3'- aGGgAGCugCGGCUUGUG---CGCCUGug -5'
31724 5' -57.9 NC_006938.1 + 35519 0.67 0.589846
Target:  5'- aUCCUCGACGCCacggagagGGACAuCGCuGAC-Ca -3'
miRNA:   3'- aGGGAGCUGCGG--------CUUGU-GCGcCUGuG- -5'
31724 5' -57.9 NC_006938.1 + 36396 0.68 0.517161
Target:  5'- -gCCUCGACGU--GGCGCGCcaucgucugauGGACGCa -3'
miRNA:   3'- agGGAGCUGCGgcUUGUGCG-----------CCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 37153 0.67 0.60042
Target:  5'- uUCaCCUCGAUGC---GCACGUGGAUg- -3'
miRNA:   3'- -AG-GGAGCUGCGgcuUGUGCGCCUGug -5'
31724 5' -57.9 NC_006938.1 + 37912 0.71 0.367849
Target:  5'- gUCUCagGGCGgCGAGCGgGCGGugGCc -3'
miRNA:   3'- -AGGGagCUGCgGCUUGUgCGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 38501 0.72 0.312483
Target:  5'- gCCCU-GACgGCCGGAguguccUACGCGGACAUc -3'
miRNA:   3'- aGGGAgCUG-CGGCUU------GUGCGCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 38562 0.67 0.60042
Target:  5'- --aCUCGACGCCGAaugACACcuccuCGGAC-Ca -3'
miRNA:   3'- aggGAGCUGCGGCU---UGUGc----GCCUGuG- -5'
31724 5' -57.9 NC_006938.1 + 40106 0.68 0.497019
Target:  5'- cUUCCUCGACGCgGAcaGCGC-CGGuCAg -3'
miRNA:   3'- -AGGGAGCUGCGgCU--UGUGcGCCuGUg -5'
31724 5' -57.9 NC_006938.1 + 42399 0.71 0.35954
Target:  5'- cUUCCUCGGCGUCGAGuucuuCGCcGACGCg -3'
miRNA:   3'- -AGGGAGCUGCGGCUUgu---GCGcCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 44616 0.69 0.468463
Target:  5'- cUCCCaucuugaagcggcagCGACgGCCGAGCAgCGUGGugAUg -3'
miRNA:   3'- -AGGGa--------------GCUG-CGGCUUGU-GCGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 44957 0.67 0.568805
Target:  5'- -aCUUCuGCGCCGccucgGACGCGCcGGGCAUg -3'
miRNA:   3'- agGGAGcUGCGGC-----UUGUGCG-CCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 46027 0.67 0.589846
Target:  5'- -gCCgCGugGgCCGAgauugacaGCACGaCGGACACc -3'
miRNA:   3'- agGGaGCugC-GGCU--------UGUGC-GCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 46237 0.66 0.625885
Target:  5'- aUCCCUCugGACcucaagcaggccacgGCgGAguacgcgguGCGCGCGGugGCg -3'
miRNA:   3'- -AGGGAG--CUG---------------CGgCU---------UGUGCGCCugUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.