miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31724 5' -57.9 NC_006938.1 + 3361 0.68 0.497019
Target:  5'- gCCCUC-ACGCaguGGCAgGCGGGCAUc -3'
miRNA:   3'- aGGGAGcUGCGgc-UUGUgCGCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 8216 0.68 0.517161
Target:  5'- cUCCCg-GAUaGCgGAACGCGUGGAC-Cg -3'
miRNA:   3'- -AGGGagCUG-CGgCUUGUGCGCCUGuG- -5'
31724 5' -57.9 NC_006938.1 + 8287 0.67 0.568805
Target:  5'- -aCCUUG-CGCCgGGugGCGUGGGCGu -3'
miRNA:   3'- agGGAGCuGCGG-CUugUGCGCCUGUg -5'
31724 5' -57.9 NC_006938.1 + 8360 0.71 0.35954
Target:  5'- aUCUggaucgCGGCGgCGGACGCGCaGGACGCc -3'
miRNA:   3'- aGGGa-----GCUGCgGCUUGUGCG-CCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 8462 0.67 0.547956
Target:  5'- aUCCaucaggUCGGCG-CGGAUACGCGGugGg -3'
miRNA:   3'- -AGGg-----AGCUGCgGCUUGUGCGCCugUg -5'
31724 5' -57.9 NC_006938.1 + 9161 0.67 0.558353
Target:  5'- -gCCUCGACuCCGGcCGCGacaGGugGCg -3'
miRNA:   3'- agGGAGCUGcGGCUuGUGCg--CCugUG- -5'
31724 5' -57.9 NC_006938.1 + 10181 0.68 0.507047
Target:  5'- -aCCUCGGaccaggucacgGCCGAggaGCACGUGGACGu -3'
miRNA:   3'- agGGAGCUg----------CGGCU---UGUGCGCCUGUg -5'
31724 5' -57.9 NC_006938.1 + 11188 0.74 0.238665
Target:  5'- cUCCUCGACGCCGAgGCcUGUGG-CACu -3'
miRNA:   3'- aGGGAGCUGCGGCU-UGuGCGCCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 12016 0.66 0.607838
Target:  5'- gCCCUCGAUggcgGCgguugcgaucucgaUGAACGCGCcGGGCAg -3'
miRNA:   3'- aGGGAGCUG----CG--------------GCUUGUGCG-CCUGUg -5'
31724 5' -57.9 NC_006938.1 + 12266 0.68 0.537621
Target:  5'- gCCUgcacggUCGugG-CGAGCugGCGGAaCGCg -3'
miRNA:   3'- aGGG------AGCugCgGCUUGugCGCCU-GUG- -5'
31724 5' -57.9 NC_006938.1 + 12705 0.78 0.134489
Target:  5'- cUCCgUCGGUGCCGAGCugGCGGAgcuCGCc -3'
miRNA:   3'- -AGGgAGCUGCGGCUUGugCGCCU---GUG- -5'
31724 5' -57.9 NC_006938.1 + 13297 0.67 0.589846
Target:  5'- cUCCCUCaauaucuugcuGCGCCGGACcCGcCGGACc- -3'
miRNA:   3'- -AGGGAGc----------UGCGGCUUGuGC-GCCUGug -5'
31724 5' -57.9 NC_006938.1 + 13462 0.66 0.63226
Target:  5'- aCCCUCGGCGgCGAcgauCGCGGccugaGCg -3'
miRNA:   3'- aGGGAGCUGCgGCUugu-GCGCCug---UG- -5'
31724 5' -57.9 NC_006938.1 + 14002 0.68 0.527354
Target:  5'- -aCCUUGACacgGUCGAGCACGUcGGCAUa -3'
miRNA:   3'- agGGAGCUG---CGGCUUGUGCGcCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 14852 0.66 0.642885
Target:  5'- aCCUggggagaGugGCUGAGC-UGCGGACAg -3'
miRNA:   3'- aGGGag-----CugCGGCUUGuGCGCCUGUg -5'
31724 5' -57.9 NC_006938.1 + 17474 0.66 0.611019
Target:  5'- gUCCCUC--CGUgCGGACGgGCGGuCACa -3'
miRNA:   3'- -AGGGAGcuGCG-GCUUGUgCGCCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 18470 0.67 0.589846
Target:  5'- gUCCCgCGACGaggacaucgccCCGAuCugGCGG-CGCa -3'
miRNA:   3'- -AGGGaGCUGC-----------GGCUuGugCGCCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 21268 0.66 0.621636
Target:  5'- aCCCgucgcuguUCGACGCgGAGCGgaaGCGGAUc- -3'
miRNA:   3'- aGGG--------AGCUGCGgCUUGUg--CGCCUGug -5'
31724 5' -57.9 NC_006938.1 + 23171 0.69 0.438898
Target:  5'- aUCCUUGAUGCCGGAgAUGuUGGcCACg -3'
miRNA:   3'- aGGGAGCUGCGGCUUgUGC-GCCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 23623 0.73 0.270247
Target:  5'- cUCCCUCGACuucacguaUGAAgACGCGGACGg -3'
miRNA:   3'- -AGGGAGCUGcg------GCUUgUGCGCCUGUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.