Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31724 | 5' | -57.9 | NC_006938.1 | + | 3361 | 0.68 | 0.497019 |
Target: 5'- gCCCUC-ACGCaguGGCAgGCGGGCAUc -3' miRNA: 3'- aGGGAGcUGCGgc-UUGUgCGCCUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 8216 | 0.68 | 0.517161 |
Target: 5'- cUCCCg-GAUaGCgGAACGCGUGGAC-Cg -3' miRNA: 3'- -AGGGagCUG-CGgCUUGUGCGCCUGuG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 8287 | 0.67 | 0.568805 |
Target: 5'- -aCCUUG-CGCCgGGugGCGUGGGCGu -3' miRNA: 3'- agGGAGCuGCGG-CUugUGCGCCUGUg -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 8360 | 0.71 | 0.35954 |
Target: 5'- aUCUggaucgCGGCGgCGGACGCGCaGGACGCc -3' miRNA: 3'- aGGGa-----GCUGCgGCUUGUGCG-CCUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 8462 | 0.67 | 0.547956 |
Target: 5'- aUCCaucaggUCGGCG-CGGAUACGCGGugGg -3' miRNA: 3'- -AGGg-----AGCUGCgGCUUGUGCGCCugUg -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 9161 | 0.67 | 0.558353 |
Target: 5'- -gCCUCGACuCCGGcCGCGacaGGugGCg -3' miRNA: 3'- agGGAGCUGcGGCUuGUGCg--CCugUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 10181 | 0.68 | 0.507047 |
Target: 5'- -aCCUCGGaccaggucacgGCCGAggaGCACGUGGACGu -3' miRNA: 3'- agGGAGCUg----------CGGCU---UGUGCGCCUGUg -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 11188 | 0.74 | 0.238665 |
Target: 5'- cUCCUCGACGCCGAgGCcUGUGG-CACu -3' miRNA: 3'- aGGGAGCUGCGGCU-UGuGCGCCuGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 12016 | 0.66 | 0.607838 |
Target: 5'- gCCCUCGAUggcgGCgguugcgaucucgaUGAACGCGCcGGGCAg -3' miRNA: 3'- aGGGAGCUG----CG--------------GCUUGUGCG-CCUGUg -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 12266 | 0.68 | 0.537621 |
Target: 5'- gCCUgcacggUCGugG-CGAGCugGCGGAaCGCg -3' miRNA: 3'- aGGG------AGCugCgGCUUGugCGCCU-GUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 12705 | 0.78 | 0.134489 |
Target: 5'- cUCCgUCGGUGCCGAGCugGCGGAgcuCGCc -3' miRNA: 3'- -AGGgAGCUGCGGCUUGugCGCCU---GUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 13297 | 0.67 | 0.589846 |
Target: 5'- cUCCCUCaauaucuugcuGCGCCGGACcCGcCGGACc- -3' miRNA: 3'- -AGGGAGc----------UGCGGCUUGuGC-GCCUGug -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 13462 | 0.66 | 0.63226 |
Target: 5'- aCCCUCGGCGgCGAcgauCGCGGccugaGCg -3' miRNA: 3'- aGGGAGCUGCgGCUugu-GCGCCug---UG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 14002 | 0.68 | 0.527354 |
Target: 5'- -aCCUUGACacgGUCGAGCACGUcGGCAUa -3' miRNA: 3'- agGGAGCUG---CGGCUUGUGCGcCUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 14852 | 0.66 | 0.642885 |
Target: 5'- aCCUggggagaGugGCUGAGC-UGCGGACAg -3' miRNA: 3'- aGGGag-----CugCGGCUUGuGCGCCUGUg -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 17474 | 0.66 | 0.611019 |
Target: 5'- gUCCCUC--CGUgCGGACGgGCGGuCACa -3' miRNA: 3'- -AGGGAGcuGCG-GCUUGUgCGCCuGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 18470 | 0.67 | 0.589846 |
Target: 5'- gUCCCgCGACGaggacaucgccCCGAuCugGCGG-CGCa -3' miRNA: 3'- -AGGGaGCUGC-----------GGCUuGugCGCCuGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 21268 | 0.66 | 0.621636 |
Target: 5'- aCCCgucgcuguUCGACGCgGAGCGgaaGCGGAUc- -3' miRNA: 3'- aGGG--------AGCUGCGgCUUGUg--CGCCUGug -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 23171 | 0.69 | 0.438898 |
Target: 5'- aUCCUUGAUGCCGGAgAUGuUGGcCACg -3' miRNA: 3'- aGGGAGCUGCGGCUUgUGC-GCCuGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 23623 | 0.73 | 0.270247 |
Target: 5'- cUCCCUCGACuucacguaUGAAgACGCGGACGg -3' miRNA: 3'- -AGGGAGCUGcg------GCUUgUGCGCCUGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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