miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31724 5' -57.9 NC_006938.1 + 62293 0.68 0.517161
Target:  5'- -gCUUCGACGC---GCAgGUGGACACg -3'
miRNA:   3'- agGGAGCUGCGgcuUGUgCGCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 58792 0.66 0.653501
Target:  5'- -gUCUCGGCGaCUGAAC-CGCGuACACc -3'
miRNA:   3'- agGGAGCUGC-GGCUUGuGCGCcUGUG- -5'
31724 5' -57.9 NC_006938.1 + 58548 0.7 0.410428
Target:  5'- aUCUCUUGGgucCGUCGGACGCGCaucggugGGGCGCu -3'
miRNA:   3'- -AGGGAGCU---GCGGCUUGUGCG-------CCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 57265 0.72 0.305109
Target:  5'- gCCCUCGA-GCCGcuCGCGCaGGCAUu -3'
miRNA:   3'- aGGGAGCUgCGGCuuGUGCGcCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 57257 0.67 0.547956
Target:  5'- cCCaCUCGACGaaGAcacGCugGCGaGCACa -3'
miRNA:   3'- aGG-GAGCUGCggCU---UGugCGCcUGUG- -5'
31724 5' -57.9 NC_006938.1 + 56749 0.68 0.517161
Target:  5'- gCCCUCGGCcuuGUCG-AC-CGUGGACAg -3'
miRNA:   3'- aGGGAGCUG---CGGCuUGuGCGCCUGUg -5'
31724 5' -57.9 NC_006938.1 + 56510 0.66 0.621636
Target:  5'- -gCCggggCGACGCCcaGGCugGCGGAagcCACu -3'
miRNA:   3'- agGGa---GCUGCGGc-UUGugCGCCU---GUG- -5'
31724 5' -57.9 NC_006938.1 + 56363 0.7 0.376288
Target:  5'- gCCCU--GCGCCuGGucaACGCGGACGCg -3'
miRNA:   3'- aGGGAgcUGCGG-CUug-UGCGCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 55733 0.66 0.63226
Target:  5'- gUCCUUCGGgGCUGGAC-CGgCcGACGCu -3'
miRNA:   3'- -AGGGAGCUgCGGCUUGuGC-GcCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 55299 0.75 0.189625
Target:  5'- cUCCCUCGAaGCCcuuGAACugGCGGAUc- -3'
miRNA:   3'- -AGGGAGCUgCGG---CUUGugCGCCUGug -5'
31724 5' -57.9 NC_006938.1 + 54609 0.66 0.65244
Target:  5'- gUCCUCGAuggUGCCuGACacauagcaguuguACGCGGugACg -3'
miRNA:   3'- aGGGAGCU---GCGGcUUG-------------UGCGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 53409 1.09 0.000797
Target:  5'- uUCCCUCGACGCCGAACACGCGGACACc -3'
miRNA:   3'- -AGGGAGCUGCGGCUUGUGCGCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 53102 0.68 0.507047
Target:  5'- gCCCUUGACaucacgGCgGAGUggGCGGACGCa -3'
miRNA:   3'- aGGGAGCUG------CGgCUUGugCGCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 52383 0.71 0.367849
Target:  5'- -gCCUCGGCGUCGAggaggaugGCG-GCGGugGCg -3'
miRNA:   3'- agGGAGCUGCGGCU--------UGUgCGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 51480 0.69 0.44832
Target:  5'- gUUCUCGuCGgCGGugACGCGGAuCACu -3'
miRNA:   3'- aGGGAGCuGCgGCUugUGCGCCU-GUG- -5'
31724 5' -57.9 NC_006938.1 + 48001 0.67 0.565665
Target:  5'- cUCCCUCGccgccuccggcaucACGCucgacaagaccuCGGGCgGCGCGGACGg -3'
miRNA:   3'- -AGGGAGC--------------UGCG------------GCUUG-UGCGCCUGUg -5'
31724 5' -57.9 NC_006938.1 + 47915 0.81 0.082292
Target:  5'- -aCCUCGACGCCGAcCGCGCuGGcCACg -3'
miRNA:   3'- agGGAGCUGCGGCUuGUGCG-CCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 46237 0.66 0.625885
Target:  5'- aUCCCUCugGACcucaagcaggccacgGCgGAguacgcgguGCGCGCGGugGCg -3'
miRNA:   3'- -AGGGAG--CUG---------------CGgCU---------UGUGCGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 46027 0.67 0.589846
Target:  5'- -gCCgCGugGgCCGAgauugacaGCACGaCGGACACc -3'
miRNA:   3'- agGGaGCugC-GGCU--------UGUGC-GCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 44957 0.67 0.568805
Target:  5'- -aCUUCuGCGCCGccucgGACGCGCcGGGCAUg -3'
miRNA:   3'- agGGAGcUGCGGC-----UUGUGCG-CCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.