miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31724 5' -57.9 NC_006938.1 + 53409 1.09 0.000797
Target:  5'- uUCCCUCGACGCCGAACACGCGGACACc -3'
miRNA:   3'- -AGGGAGCUGCGGCUUGUGCGCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 47915 0.81 0.082292
Target:  5'- -aCCUCGACGCCGAcCGCGCuGGcCACg -3'
miRNA:   3'- agGGAGCUGCGGCUuGUGCG-CCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 12705 0.78 0.134489
Target:  5'- cUCCgUCGGUGCCGAGCugGCGGAgcuCGCc -3'
miRNA:   3'- -AGGgAGCUGCGGCUUGugCGCCU---GUG- -5'
31724 5' -57.9 NC_006938.1 + 55299 0.75 0.189625
Target:  5'- cUCCCUCGAaGCCcuuGAACugGCGGAUc- -3'
miRNA:   3'- -AGGGAGCUgCGG---CUUGugCGCCUGug -5'
31724 5' -57.9 NC_006938.1 + 11188 0.74 0.238665
Target:  5'- cUCCUCGACGCCGAgGCcUGUGG-CACu -3'
miRNA:   3'- aGGGAGCUGCGGCU-UGuGCGCCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 23623 0.73 0.270247
Target:  5'- cUCCCUCGACuucacguaUGAAgACGCGGACGg -3'
miRNA:   3'- -AGGGAGCUGcg------GCUUgUGCGCCUGUg -5'
31724 5' -57.9 NC_006938.1 + 57265 0.72 0.305109
Target:  5'- gCCCUCGA-GCCGcuCGCGCaGGCAUu -3'
miRNA:   3'- aGGGAGCUgCGGCuuGUGCGcCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 38501 0.72 0.312483
Target:  5'- gCCCU-GACgGCCGGAguguccUACGCGGACAUc -3'
miRNA:   3'- aGGGAgCUG-CGGCUU------GUGCGCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 8360 0.71 0.35954
Target:  5'- aUCUggaucgCGGCGgCGGACGCGCaGGACGCc -3'
miRNA:   3'- aGGGa-----GCUGCgGCUUGUGCG-CCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 42399 0.71 0.35954
Target:  5'- cUUCCUCGGCGUCGAGuucuuCGCcGACGCg -3'
miRNA:   3'- -AGGGAGCUGCGGCUUgu---GCGcCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 52383 0.71 0.367849
Target:  5'- -gCCUCGGCGUCGAggaggaugGCG-GCGGugGCg -3'
miRNA:   3'- agGGAGCUGCGGCU--------UGUgCGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 37912 0.71 0.367849
Target:  5'- gUCUCagGGCGgCGAGCGgGCGGugGCc -3'
miRNA:   3'- -AGGGagCUGCgGCUUGUgCGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 56363 0.7 0.376288
Target:  5'- gCCCU--GCGCCuGGucaACGCGGACGCg -3'
miRNA:   3'- aGGGAgcUGCGG-CUug-UGCGCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 58548 0.7 0.410428
Target:  5'- aUCUCUUGGgucCGUCGGACGCGCaucggugGGGCGCu -3'
miRNA:   3'- -AGGGAGCU---GCGGCUUGUGCG-------CCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 34929 0.7 0.411328
Target:  5'- aCUgUCGugGUCGAGCACccaGCGGGCc- -3'
miRNA:   3'- aGGgAGCugCGGCUUGUG---CGCCUGug -5'
31724 5' -57.9 NC_006938.1 + 23171 0.69 0.438898
Target:  5'- aUCCUUGAUGCCGGAgAUGuUGGcCACg -3'
miRNA:   3'- aGGGAGCUGCGGCUUgUGC-GCCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 51480 0.69 0.44832
Target:  5'- gUUCUCGuCGgCGGugACGCGGAuCACu -3'
miRNA:   3'- aGGGAGCuGCgGCUugUGCGCCU-GUG- -5'
31724 5' -57.9 NC_006938.1 + 44616 0.69 0.468463
Target:  5'- cUCCCaucuugaagcggcagCGACgGCCGAGCAgCGUGGugAUg -3'
miRNA:   3'- -AGGGa--------------GCUG-CGGCUUGU-GCGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 26816 0.68 0.497019
Target:  5'- aCUCUCGugGCCGucaAgGCGGuCAUg -3'
miRNA:   3'- aGGGAGCugCGGCuugUgCGCCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 3361 0.68 0.497019
Target:  5'- gCCCUC-ACGCaguGGCAgGCGGGCAUc -3'
miRNA:   3'- aGGGAGcUGCGgc-UUGUgCGCCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.