miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31724 5' -57.9 NC_006938.1 + 21268 0.66 0.621636
Target:  5'- aCCCgucgcuguUCGACGCgGAGCGgaaGCGGAUc- -3'
miRNA:   3'- aGGG--------AGCUGCGgCUUGUg--CGCCUGug -5'
31724 5' -57.9 NC_006938.1 + 12016 0.66 0.607838
Target:  5'- gCCCUCGAUggcgGCgguugcgaucucgaUGAACGCGCcGGGCAg -3'
miRNA:   3'- aGGGAGCUG----CG--------------GCUUGUGCG-CCUGUg -5'
31724 5' -57.9 NC_006938.1 + 29322 0.66 0.611019
Target:  5'- -gCCUCGcCGaggaUGAGCACGCGG-UACu -3'
miRNA:   3'- agGGAGCuGCg---GCUUGUGCGCCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 56510 0.66 0.621636
Target:  5'- -gCCggggCGACGCCcaGGCugGCGGAagcCACu -3'
miRNA:   3'- agGGa---GCUGCGGc-UUGugCGCCU---GUG- -5'
31724 5' -57.9 NC_006938.1 + 13462 0.66 0.63226
Target:  5'- aCCCUCGGCGgCGAcgauCGCGGccugaGCg -3'
miRNA:   3'- aGGGAGCUGCgGCUugu-GCGCCug---UG- -5'
31724 5' -57.9 NC_006938.1 + 23653 0.66 0.63226
Target:  5'- cCCCaCGA-GCCGAACGCgagcgucuccGUGGugGCg -3'
miRNA:   3'- aGGGaGCUgCGGCUUGUG----------CGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 54609 0.66 0.65244
Target:  5'- gUCCUCGAuggUGCCuGACacauagcaguuguACGCGGugACg -3'
miRNA:   3'- aGGGAGCU---GCGGcUUG-------------UGCGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 58792 0.66 0.653501
Target:  5'- -gUCUCGGCGaCUGAAC-CGCGuACACc -3'
miRNA:   3'- agGGAGCUGC-GGCUUGuGCGCcUGUG- -5'
31724 5' -57.9 NC_006938.1 + 17474 0.66 0.611019
Target:  5'- gUCCCUC--CGUgCGGACGgGCGGuCACa -3'
miRNA:   3'- -AGGGAGcuGCG-GCUUGUgCGCCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 46237 0.66 0.625885
Target:  5'- aUCCCUCugGACcucaagcaggccacgGCgGAguacgcgguGCGCGCGGugGCg -3'
miRNA:   3'- -AGGGAG--CUG---------------CGgCU---------UGUGCGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 55733 0.66 0.63226
Target:  5'- gUCCUUCGGgGCUGGAC-CGgCcGACGCu -3'
miRNA:   3'- -AGGGAGCUgCGGCUUGuGC-GcCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 27279 0.66 0.63226
Target:  5'- gUCCUuccagCGGCGCUGGuCA-GCGGugGCa -3'
miRNA:   3'- -AGGGa----GCUGCGGCUuGUgCGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 14852 0.66 0.642885
Target:  5'- aCCUggggagaGugGCUGAGC-UGCGGACAg -3'
miRNA:   3'- aGGGag-----CugCGGCUUGuGCGCCUGUg -5'
31724 5' -57.9 NC_006938.1 + 25325 0.66 0.642885
Target:  5'- gCCCgaacggUCGACugguccgaGCCGggUcuGCGCGuGACGCg -3'
miRNA:   3'- aGGG------AGCUG--------CGGCuuG--UGCGC-CUGUG- -5'
31724 5' -57.9 NC_006938.1 + 38562 0.67 0.60042
Target:  5'- --aCUCGACGCCGAaugACACcuccuCGGAC-Ca -3'
miRNA:   3'- aggGAGCUGCGGCU---UGUGc----GCCUGuG- -5'
31724 5' -57.9 NC_006938.1 + 35519 0.67 0.589846
Target:  5'- aUCCUCGACGCCacggagagGGACAuCGCuGAC-Ca -3'
miRNA:   3'- aGGGAGCUGCGG--------CUUGU-GCGcCUGuG- -5'
31724 5' -57.9 NC_006938.1 + 46027 0.67 0.589846
Target:  5'- -gCCgCGugGgCCGAgauugacaGCACGaCGGACACc -3'
miRNA:   3'- agGGaGCugC-GGCU--------UGUGC-GCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 18470 0.67 0.589846
Target:  5'- gUCCCgCGACGaggacaucgccCCGAuCugGCGG-CGCa -3'
miRNA:   3'- -AGGGaGCUGC-----------GGCUuGugCGCCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 48001 0.67 0.565665
Target:  5'- cUCCCUCGccgccuccggcaucACGCucgacaagaccuCGGGCgGCGCGGACGg -3'
miRNA:   3'- -AGGGAGC--------------UGCG------------GCUUG-UGCGCCUGUg -5'
31724 5' -57.9 NC_006938.1 + 37153 0.67 0.60042
Target:  5'- uUCaCCUCGAUGC---GCACGUGGAUg- -3'
miRNA:   3'- -AG-GGAGCUGCGgcuUGUGCGCCUGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.