Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31724 | 5' | -57.9 | NC_006938.1 | + | 53409 | 1.09 | 0.000797 |
Target: 5'- uUCCCUCGACGCCGAACACGCGGACACc -3' miRNA: 3'- -AGGGAGCUGCGGCUUGUGCGCCUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 47915 | 0.81 | 0.082292 |
Target: 5'- -aCCUCGACGCCGAcCGCGCuGGcCACg -3' miRNA: 3'- agGGAGCUGCGGCUuGUGCG-CCuGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 12705 | 0.78 | 0.134489 |
Target: 5'- cUCCgUCGGUGCCGAGCugGCGGAgcuCGCc -3' miRNA: 3'- -AGGgAGCUGCGGCUUGugCGCCU---GUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 55299 | 0.75 | 0.189625 |
Target: 5'- cUCCCUCGAaGCCcuuGAACugGCGGAUc- -3' miRNA: 3'- -AGGGAGCUgCGG---CUUGugCGCCUGug -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 11188 | 0.74 | 0.238665 |
Target: 5'- cUCCUCGACGCCGAgGCcUGUGG-CACu -3' miRNA: 3'- aGGGAGCUGCGGCU-UGuGCGCCuGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 23623 | 0.73 | 0.270247 |
Target: 5'- cUCCCUCGACuucacguaUGAAgACGCGGACGg -3' miRNA: 3'- -AGGGAGCUGcg------GCUUgUGCGCCUGUg -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 57265 | 0.72 | 0.305109 |
Target: 5'- gCCCUCGA-GCCGcuCGCGCaGGCAUu -3' miRNA: 3'- aGGGAGCUgCGGCuuGUGCGcCUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 38501 | 0.72 | 0.312483 |
Target: 5'- gCCCU-GACgGCCGGAguguccUACGCGGACAUc -3' miRNA: 3'- aGGGAgCUG-CGGCUU------GUGCGCCUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 8360 | 0.71 | 0.35954 |
Target: 5'- aUCUggaucgCGGCGgCGGACGCGCaGGACGCc -3' miRNA: 3'- aGGGa-----GCUGCgGCUUGUGCG-CCUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 52383 | 0.71 | 0.367849 |
Target: 5'- -gCCUCGGCGUCGAggaggaugGCG-GCGGugGCg -3' miRNA: 3'- agGGAGCUGCGGCU--------UGUgCGCCugUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 42399 | 0.71 | 0.35954 |
Target: 5'- cUUCCUCGGCGUCGAGuucuuCGCcGACGCg -3' miRNA: 3'- -AGGGAGCUGCGGCUUgu---GCGcCUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 37912 | 0.71 | 0.367849 |
Target: 5'- gUCUCagGGCGgCGAGCGgGCGGugGCc -3' miRNA: 3'- -AGGGagCUGCgGCUUGUgCGCCugUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 56363 | 0.7 | 0.376288 |
Target: 5'- gCCCU--GCGCCuGGucaACGCGGACGCg -3' miRNA: 3'- aGGGAgcUGCGG-CUug-UGCGCCUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 34929 | 0.7 | 0.411328 |
Target: 5'- aCUgUCGugGUCGAGCACccaGCGGGCc- -3' miRNA: 3'- aGGgAGCugCGGCUUGUG---CGCCUGug -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 58548 | 0.7 | 0.410428 |
Target: 5'- aUCUCUUGGgucCGUCGGACGCGCaucggugGGGCGCu -3' miRNA: 3'- -AGGGAGCU---GCGGCUUGUGCG-------CCUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 23171 | 0.69 | 0.438898 |
Target: 5'- aUCCUUGAUGCCGGAgAUGuUGGcCACg -3' miRNA: 3'- aGGGAGCUGCGGCUUgUGC-GCCuGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 51480 | 0.69 | 0.44832 |
Target: 5'- gUUCUCGuCGgCGGugACGCGGAuCACu -3' miRNA: 3'- aGGGAGCuGCgGCUugUGCGCCU-GUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 44616 | 0.69 | 0.468463 |
Target: 5'- cUCCCaucuugaagcggcagCGACgGCCGAGCAgCGUGGugAUg -3' miRNA: 3'- -AGGGa--------------GCUG-CGGCUUGU-GCGCCugUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 14002 | 0.68 | 0.527354 |
Target: 5'- -aCCUUGACacgGUCGAGCACGUcGGCAUa -3' miRNA: 3'- agGGAGCUG---CGGCUUGUGCGcCUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 53102 | 0.68 | 0.507047 |
Target: 5'- gCCCUUGACaucacgGCgGAGUggGCGGACGCa -3' miRNA: 3'- aGGGAGCUG------CGgCUUGugCGCCUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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