miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31724 5' -57.9 NC_006938.1 + 17474 0.66 0.611019
Target:  5'- gUCCCUC--CGUgCGGACGgGCGGuCACa -3'
miRNA:   3'- -AGGGAGcuGCG-GCUUGUgCGCCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 53102 0.68 0.507047
Target:  5'- gCCCUUGACaucacgGCgGAGUggGCGGACGCa -3'
miRNA:   3'- aGGGAGCUG------CGgCUUGugCGCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 62293 0.68 0.517161
Target:  5'- -gCUUCGACGC---GCAgGUGGACACg -3'
miRNA:   3'- agGGAGCUGCGgcuUGUgCGCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 14002 0.68 0.527354
Target:  5'- -aCCUUGACacgGUCGAGCACGUcGGCAUa -3'
miRNA:   3'- agGGAGCUG---CGGCUUGUGCGcCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 48001 0.67 0.565665
Target:  5'- cUCCCUCGccgccuccggcaucACGCucgacaagaccuCGGGCgGCGCGGACGg -3'
miRNA:   3'- -AGGGAGC--------------UGCG------------GCUUG-UGCGCCUGUg -5'
31724 5' -57.9 NC_006938.1 + 18470 0.67 0.589846
Target:  5'- gUCCCgCGACGaggacaucgccCCGAuCugGCGG-CGCa -3'
miRNA:   3'- -AGGGaGCUGC-----------GGCUuGugCGCCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 46027 0.67 0.589846
Target:  5'- -gCCgCGugGgCCGAgauugacaGCACGaCGGACACc -3'
miRNA:   3'- agGGaGCugC-GGCU--------UGUGC-GCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 35519 0.67 0.589846
Target:  5'- aUCCUCGACGCCacggagagGGACAuCGCuGAC-Ca -3'
miRNA:   3'- aGGGAGCUGCGG--------CUUGU-GCGcCUGuG- -5'
31724 5' -57.9 NC_006938.1 + 38562 0.67 0.60042
Target:  5'- --aCUCGACGCCGAaugACACcuccuCGGAC-Ca -3'
miRNA:   3'- aggGAGCUGCGGCU---UGUGc----GCCUGuG- -5'
31724 5' -57.9 NC_006938.1 + 10181 0.68 0.507047
Target:  5'- -aCCUCGGaccaggucacgGCCGAggaGCACGUGGACGu -3'
miRNA:   3'- agGGAGCUg----------CGGCU---UGUGCGCCUGUg -5'
31724 5' -57.9 NC_006938.1 + 40106 0.68 0.497019
Target:  5'- cUUCCUCGACGCgGAcaGCGC-CGGuCAg -3'
miRNA:   3'- -AGGGAGCUGCGgCU--UGUGcGCCuGUg -5'
31724 5' -57.9 NC_006938.1 + 26816 0.68 0.497019
Target:  5'- aCUCUCGugGCCGucaAgGCGGuCAUg -3'
miRNA:   3'- aGGGAGCugCGGCuugUgCGCCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 23623 0.73 0.270247
Target:  5'- cUCCCUCGACuucacguaUGAAgACGCGGACGg -3'
miRNA:   3'- -AGGGAGCUGcg------GCUUgUGCGCCUGUg -5'
31724 5' -57.9 NC_006938.1 + 57265 0.72 0.305109
Target:  5'- gCCCUCGA-GCCGcuCGCGCaGGCAUu -3'
miRNA:   3'- aGGGAGCUgCGGCuuGUGCGcCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 38501 0.72 0.312483
Target:  5'- gCCCU-GACgGCCGGAguguccUACGCGGACAUc -3'
miRNA:   3'- aGGGAgCUG-CGGCUU------GUGCGCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 42399 0.71 0.35954
Target:  5'- cUUCCUCGGCGUCGAGuucuuCGCcGACGCg -3'
miRNA:   3'- -AGGGAGCUGCGGCUUgu---GCGcCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 8360 0.71 0.35954
Target:  5'- aUCUggaucgCGGCGgCGGACGCGCaGGACGCc -3'
miRNA:   3'- aGGGa-----GCUGCgGCUUGUGCG-CCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 37912 0.71 0.367849
Target:  5'- gUCUCagGGCGgCGAGCGgGCGGugGCc -3'
miRNA:   3'- -AGGGagCUGCgGCUUGUgCGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 58548 0.7 0.410428
Target:  5'- aUCUCUUGGgucCGUCGGACGCGCaucggugGGGCGCu -3'
miRNA:   3'- -AGGGAGCU---GCGGCUUGUGCG-------CCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 3361 0.68 0.497019
Target:  5'- gCCCUC-ACGCaguGGCAgGCGGGCAUc -3'
miRNA:   3'- aGGGAGcUGCGgc-UUGUgCGCCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.