miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31724 5' -57.9 NC_006938.1 + 8462 0.67 0.547956
Target:  5'- aUCCaucaggUCGGCG-CGGAUACGCGGugGg -3'
miRNA:   3'- -AGGg-----AGCUGCgGCUUGUGCGCCugUg -5'
31724 5' -57.9 NC_006938.1 + 58792 0.66 0.653501
Target:  5'- -gUCUCGGCGaCUGAAC-CGCGuACACc -3'
miRNA:   3'- agGGAGCUGC-GGCUUGuGCGCcUGUG- -5'
31724 5' -57.9 NC_006938.1 + 54609 0.66 0.65244
Target:  5'- gUCCUCGAuggUGCCuGACacauagcaguuguACGCGGugACg -3'
miRNA:   3'- aGGGAGCU---GCGGcUUG-------------UGCGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 13297 0.67 0.589846
Target:  5'- cUCCCUCaauaucuugcuGCGCCGGACcCGcCGGACc- -3'
miRNA:   3'- -AGGGAGc----------UGCGGCUUGuGC-GCCUGug -5'
31724 5' -57.9 NC_006938.1 + 44957 0.67 0.568805
Target:  5'- -aCUUCuGCGCCGccucgGACGCGCcGGGCAUg -3'
miRNA:   3'- agGGAGcUGCGGC-----UUGUGCG-CCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 23653 0.66 0.63226
Target:  5'- cCCCaCGA-GCCGAACGCgagcgucuccGUGGugGCg -3'
miRNA:   3'- aGGGaGCUgCGGCUUGUG----------CGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 12016 0.66 0.607838
Target:  5'- gCCCUCGAUggcgGCgguugcgaucucgaUGAACGCGCcGGGCAg -3'
miRNA:   3'- aGGGAGCUG----CG--------------GCUUGUGCG-CCUGUg -5'
31724 5' -57.9 NC_006938.1 + 28045 0.67 0.589846
Target:  5'- gUCCCUCuccguGGCGUCGAggaucucgaagAUGCGCuGGCGCa -3'
miRNA:   3'- -AGGGAG-----CUGCGGCU-----------UGUGCGcCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 57257 0.67 0.547956
Target:  5'- cCCaCUCGACGaaGAcacGCugGCGaGCACa -3'
miRNA:   3'- aGG-GAGCUGCggCU---UGugCGCcUGUG- -5'
31724 5' -57.9 NC_006938.1 + 56749 0.68 0.517161
Target:  5'- gCCCUCGGCcuuGUCG-AC-CGUGGACAg -3'
miRNA:   3'- aGGGAGCUG---CGGCuUGuGCGCCUGUg -5'
31724 5' -57.9 NC_006938.1 + 53409 1.09 0.000797
Target:  5'- uUCCCUCGACGCCGAACACGCGGACACc -3'
miRNA:   3'- -AGGGAGCUGCGGCUUGUGCGCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 56510 0.66 0.621636
Target:  5'- -gCCggggCGACGCCcaGGCugGCGGAagcCACu -3'
miRNA:   3'- agGGa---GCUGCGGc-UUGugCGCCU---GUG- -5'
31724 5' -57.9 NC_006938.1 + 13462 0.66 0.63226
Target:  5'- aCCCUCGGCGgCGAcgauCGCGGccugaGCg -3'
miRNA:   3'- aGGGAGCUGCgGCUugu-GCGCCug---UG- -5'
31724 5' -57.9 NC_006938.1 + 30243 0.67 0.558353
Target:  5'- cUUCCUCGAC-CCG-GCGCGCuugucGGCGCg -3'
miRNA:   3'- -AGGGAGCUGcGGCuUGUGCGc----CUGUG- -5'
31724 5' -57.9 NC_006938.1 + 9161 0.67 0.558353
Target:  5'- -gCCUCGACuCCGGcCGCGacaGGugGCg -3'
miRNA:   3'- agGGAGCUGcGGCUuGUGCg--CCugUG- -5'
31724 5' -57.9 NC_006938.1 + 29322 0.66 0.611019
Target:  5'- -gCCUCGcCGaggaUGAGCACGCGG-UACu -3'
miRNA:   3'- agGGAGCuGCg---GCUUGUGCGCCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 8216 0.68 0.517161
Target:  5'- cUCCCg-GAUaGCgGAACGCGUGGAC-Cg -3'
miRNA:   3'- -AGGGagCUG-CGgCUUGUGCGCCUGuG- -5'
31724 5' -57.9 NC_006938.1 + 36396 0.68 0.517161
Target:  5'- -gCCUCGACGU--GGCGCGCcaucgucugauGGACGCa -3'
miRNA:   3'- agGGAGCUGCGgcUUGUGCG-----------CCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 37153 0.67 0.60042
Target:  5'- uUCaCCUCGAUGC---GCACGUGGAUg- -3'
miRNA:   3'- -AG-GGAGCUGCGgcuUGUGCGCCUGug -5'
31724 5' -57.9 NC_006938.1 + 8287 0.67 0.568805
Target:  5'- -aCCUUG-CGCCgGGugGCGUGGGCGu -3'
miRNA:   3'- agGGAGCuGCGG-CUugUGCGCCUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.