Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31724 | 5' | -57.9 | NC_006938.1 | + | 8462 | 0.67 | 0.547956 |
Target: 5'- aUCCaucaggUCGGCG-CGGAUACGCGGugGg -3' miRNA: 3'- -AGGg-----AGCUGCgGCUUGUGCGCCugUg -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 12266 | 0.68 | 0.537621 |
Target: 5'- gCCUgcacggUCGugG-CGAGCugGCGGAaCGCg -3' miRNA: 3'- aGGG------AGCugCgGCUUGugCGCCU-GUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 34929 | 0.7 | 0.411328 |
Target: 5'- aCUgUCGugGUCGAGCACccaGCGGGCc- -3' miRNA: 3'- aGGgAGCugCGGCUUGUG---CGCCUGug -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 12705 | 0.78 | 0.134489 |
Target: 5'- cUCCgUCGGUGCCGAGCugGCGGAgcuCGCc -3' miRNA: 3'- -AGGgAGCUGCGGCUUGugCGCCU---GUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 8216 | 0.68 | 0.517161 |
Target: 5'- cUCCCg-GAUaGCgGAACGCGUGGAC-Cg -3' miRNA: 3'- -AGGGagCUG-CGgCUUGUGCGCCUGuG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 44616 | 0.69 | 0.468463 |
Target: 5'- cUCCCaucuugaagcggcagCGACgGCCGAGCAgCGUGGugAUg -3' miRNA: 3'- -AGGGa--------------GCUG-CGGCUUGU-GCGCCugUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 56363 | 0.7 | 0.376288 |
Target: 5'- gCCCU--GCGCCuGGucaACGCGGACGCg -3' miRNA: 3'- aGGGAgcUGCGG-CUug-UGCGCCUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 57257 | 0.67 | 0.547956 |
Target: 5'- cCCaCUCGACGaaGAcacGCugGCGaGCACa -3' miRNA: 3'- aGG-GAGCUGCggCU---UGugCGCcUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 36396 | 0.68 | 0.517161 |
Target: 5'- -gCCUCGACGU--GGCGCGCcaucgucugauGGACGCa -3' miRNA: 3'- agGGAGCUGCGgcUUGUGCG-----------CCUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 56749 | 0.68 | 0.517161 |
Target: 5'- gCCCUCGGCcuuGUCG-AC-CGUGGACAg -3' miRNA: 3'- aGGGAGCUG---CGGCuUGuGCGCCUGUg -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 53102 | 0.68 | 0.507047 |
Target: 5'- gCCCUUGACaucacgGCgGAGUggGCGGACGCa -3' miRNA: 3'- aGGGAGCUG------CGgCUUGugCGCCUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 57265 | 0.72 | 0.305109 |
Target: 5'- gCCCUCGA-GCCGcuCGCGCaGGCAUu -3' miRNA: 3'- aGGGAGCUgCGGCuuGUGCGcCUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 14002 | 0.68 | 0.527354 |
Target: 5'- -aCCUUGACacgGUCGAGCACGUcGGCAUa -3' miRNA: 3'- agGGAGCUG---CGGCUUGUGCGcCUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 27279 | 0.66 | 0.63226 |
Target: 5'- gUCCUuccagCGGCGCUGGuCA-GCGGugGCa -3' miRNA: 3'- -AGGGa----GCUGCGGCUuGUgCGCCugUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 37912 | 0.71 | 0.367849 |
Target: 5'- gUCUCagGGCGgCGAGCGgGCGGugGCc -3' miRNA: 3'- -AGGGagCUGCgGCUUGUgCGCCugUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 55733 | 0.66 | 0.63226 |
Target: 5'- gUCCUUCGGgGCUGGAC-CGgCcGACGCu -3' miRNA: 3'- -AGGGAGCUgCGGCUUGuGC-GcCUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 14852 | 0.66 | 0.642885 |
Target: 5'- aCCUggggagaGugGCUGAGC-UGCGGACAg -3' miRNA: 3'- aGGGag-----CugCGGCUUGuGCGCCUGUg -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 25325 | 0.66 | 0.642885 |
Target: 5'- gCCCgaacggUCGACugguccgaGCCGggUcuGCGCGuGACGCg -3' miRNA: 3'- aGGG------AGCUG--------CGGCuuG--UGCGC-CUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 62293 | 0.68 | 0.517161 |
Target: 5'- -gCUUCGACGC---GCAgGUGGACACg -3' miRNA: 3'- agGGAGCUGCGgcuUGUgCGCCUGUG- -5' |
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31724 | 5' | -57.9 | NC_006938.1 | + | 10181 | 0.68 | 0.507047 |
Target: 5'- -aCCUCGGaccaggucacgGCCGAggaGCACGUGGACGu -3' miRNA: 3'- agGGAGCUg----------CGGCU---UGUGCGCCUGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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