miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31724 5' -57.9 NC_006938.1 + 37912 0.71 0.367849
Target:  5'- gUCUCagGGCGgCGAGCGgGCGGugGCc -3'
miRNA:   3'- -AGGGagCUGCgGCUUGUgCGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 58548 0.7 0.410428
Target:  5'- aUCUCUUGGgucCGUCGGACGCGCaucggugGGGCGCu -3'
miRNA:   3'- -AGGGAGCU---GCGGCUUGUGCG-------CCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 3361 0.68 0.497019
Target:  5'- gCCCUC-ACGCaguGGCAgGCGGGCAUc -3'
miRNA:   3'- aGGGAGcUGCGgc-UUGUgCGCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 26816 0.68 0.497019
Target:  5'- aCUCUCGugGCCGucaAgGCGGuCAUg -3'
miRNA:   3'- aGGGAGCugCGGCuugUgCGCCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 40106 0.68 0.497019
Target:  5'- cUUCCUCGACGCgGAcaGCGC-CGGuCAg -3'
miRNA:   3'- -AGGGAGCUGCGgCU--UGUGcGCCuGUg -5'
31724 5' -57.9 NC_006938.1 + 10181 0.68 0.507047
Target:  5'- -aCCUCGGaccaggucacgGCCGAggaGCACGUGGACGu -3'
miRNA:   3'- agGGAGCUg----------CGGCU---UGUGCGCCUGUg -5'
31724 5' -57.9 NC_006938.1 + 53102 0.68 0.507047
Target:  5'- gCCCUUGACaucacgGCgGAGUggGCGGACGCa -3'
miRNA:   3'- aGGGAGCUG------CGgCUUGugCGCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 8462 0.67 0.547956
Target:  5'- aUCCaucaggUCGGCG-CGGAUACGCGGugGg -3'
miRNA:   3'- -AGGg-----AGCUGCgGCUUGUGCGCCugUg -5'
31724 5' -57.9 NC_006938.1 + 12266 0.68 0.537621
Target:  5'- gCCUgcacggUCGugG-CGAGCugGCGGAaCGCg -3'
miRNA:   3'- aGGG------AGCugCgGCUUGugCGCCU-GUG- -5'
31724 5' -57.9 NC_006938.1 + 8216 0.68 0.517161
Target:  5'- cUCCCg-GAUaGCgGAACGCGUGGAC-Cg -3'
miRNA:   3'- -AGGGagCUG-CGgCUUGUGCGCCUGuG- -5'
31724 5' -57.9 NC_006938.1 + 56749 0.68 0.517161
Target:  5'- gCCCUCGGCcuuGUCG-AC-CGUGGACAg -3'
miRNA:   3'- aGGGAGCUG---CGGCuUGuGCGCCUGUg -5'
31724 5' -57.9 NC_006938.1 + 36396 0.68 0.517161
Target:  5'- -gCCUCGACGU--GGCGCGCcaucgucugauGGACGCa -3'
miRNA:   3'- agGGAGCUGCGgcUUGUGCG-----------CCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 44616 0.69 0.468463
Target:  5'- cUCCCaucuugaagcggcagCGACgGCCGAGCAgCGUGGugAUg -3'
miRNA:   3'- -AGGGa--------------GCUG-CGGCUUGU-GCGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 51480 0.69 0.44832
Target:  5'- gUUCUCGuCGgCGGugACGCGGAuCACu -3'
miRNA:   3'- aGGGAGCuGCgGCUugUGCGCCU-GUG- -5'
31724 5' -57.9 NC_006938.1 + 23171 0.69 0.438898
Target:  5'- aUCCUUGAUGCCGGAgAUGuUGGcCACg -3'
miRNA:   3'- aGGGAGCUGCGGCUUgUGC-GCCuGUG- -5'
31724 5' -57.9 NC_006938.1 + 34929 0.7 0.411328
Target:  5'- aCUgUCGugGUCGAGCACccaGCGGGCc- -3'
miRNA:   3'- aGGgAGCugCGGCUUGUG---CGCCUGug -5'
31724 5' -57.9 NC_006938.1 + 56363 0.7 0.376288
Target:  5'- gCCCU--GCGCCuGGucaACGCGGACGCg -3'
miRNA:   3'- aGGGAgcUGCGG-CUug-UGCGCCUGUG- -5'
31724 5' -57.9 NC_006938.1 + 52383 0.71 0.367849
Target:  5'- -gCCUCGGCGUCGAggaggaugGCG-GCGGugGCg -3'
miRNA:   3'- agGGAGCUGCGGCU--------UGUgCGCCugUG- -5'
31724 5' -57.9 NC_006938.1 + 55299 0.75 0.189625
Target:  5'- cUCCCUCGAaGCCcuuGAACugGCGGAUc- -3'
miRNA:   3'- -AGGGAGCUgCGG---CUUGugCGCCUGug -5'
31724 5' -57.9 NC_006938.1 + 12705 0.78 0.134489
Target:  5'- cUCCgUCGGUGCCGAGCugGCGGAgcuCGCc -3'
miRNA:   3'- -AGGgAGCUGCGGCUUGugCGCCU---GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.