miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31742 5' -55.7 NC_006938.1 + 12314 0.66 0.786234
Target:  5'- aGCUGGUCGCuGAagGCGaugaGCGCCGAgaUGGc -3'
miRNA:   3'- -CGGUCGGCG-CUagUGC----UGUGGCU--ACC- -5'
31742 5' -55.7 NC_006938.1 + 13645 0.66 0.785273
Target:  5'- cUCGGCCGCGcugacaugcucauGgagCGCGGCACUG-UGGc -3'
miRNA:   3'- cGGUCGGCGC-------------Ua--GUGCUGUGGCuACC- -5'
31742 5' -55.7 NC_006938.1 + 26783 0.66 0.785273
Target:  5'- uGCUGGCCcucgcacuuguacGCcAUCACGACGCC--UGGa -3'
miRNA:   3'- -CGGUCGG-------------CGcUAGUGCUGUGGcuACC- -5'
31742 5' -55.7 NC_006938.1 + 25111 0.66 0.780443
Target:  5'- aGCuCGGCCGCGuUC-CGACccuguacagcaacaaGCCGcUGGc -3'
miRNA:   3'- -CG-GUCGGCGCuAGuGCUG---------------UGGCuACC- -5'
31742 5' -55.7 NC_006938.1 + 51380 0.66 0.776553
Target:  5'- uGUCAGCCaggGUGAcacccuucuUCugGACAgacUCGAUGGu -3'
miRNA:   3'- -CGGUCGG---CGCU---------AGugCUGU---GGCUACC- -5'
31742 5' -55.7 NC_006938.1 + 21073 0.66 0.776553
Target:  5'- -aCGGCCG-GAUCACGACgACCa---- -3'
miRNA:   3'- cgGUCGGCgCUAGUGCUG-UGGcuacc -5'
31742 5' -55.7 NC_006938.1 + 4140 0.66 0.776553
Target:  5'- aGUCGGCCG-GGUCcgGCGGCGCCa---- -3'
miRNA:   3'- -CGGUCGGCgCUAG--UGCUGUGGcuacc -5'
31742 5' -55.7 NC_006938.1 + 43231 0.66 0.766731
Target:  5'- cCCGGCCaGUGccuUCGCGGCGaacagcaCGGUGGc -3'
miRNA:   3'- cGGUCGG-CGCu--AGUGCUGUg------GCUACC- -5'
31742 5' -55.7 NC_006938.1 + 60696 0.66 0.766731
Target:  5'- cGCCAGUCGCGAccUCGgaGCGuuaUGAUGGu -3'
miRNA:   3'- -CGGUCGGCGCU--AGUgcUGUg--GCUACC- -5'
31742 5' -55.7 NC_006938.1 + 22433 0.66 0.746702
Target:  5'- aGCCAGCgGgGAUgGuCG-UugCGAUGGc -3'
miRNA:   3'- -CGGUCGgCgCUAgU-GCuGugGCUACC- -5'
31742 5' -55.7 NC_006938.1 + 38785 0.66 0.736518
Target:  5'- cGCCauGGCgGCGAUCGCcGCGCCcuucuugcUGGg -3'
miRNA:   3'- -CGG--UCGgCGCUAGUGcUGUGGcu------ACC- -5'
31742 5' -55.7 NC_006938.1 + 21854 0.67 0.726234
Target:  5'- cCCAGacgaCGUGAUCGCGuCGaucaUGAUGGa -3'
miRNA:   3'- cGGUCg---GCGCUAGUGCuGUg---GCUACC- -5'
31742 5' -55.7 NC_006938.1 + 12015 0.67 0.726234
Target:  5'- cGCCcucgauGGCgGCGGUUGCGAUcUCGAUGa -3'
miRNA:   3'- -CGG------UCGgCGCUAGUGCUGuGGCUACc -5'
31742 5' -55.7 NC_006938.1 + 24837 0.67 0.705409
Target:  5'- cCCGGCCaCGGUCGCG-CGCUGcugaagagaAUGGa -3'
miRNA:   3'- cGGUCGGcGCUAGUGCuGUGGC---------UACC- -5'
31742 5' -55.7 NC_006938.1 + 50575 0.67 0.69489
Target:  5'- gGCCAGUucuUGgGGUCACGAgACCGcccgaGGa -3'
miRNA:   3'- -CGGUCG---GCgCUAGUGCUgUGGCua---CC- -5'
31742 5' -55.7 NC_006938.1 + 12691 0.67 0.69489
Target:  5'- cUCGGCCGUGAUCucuccguCGGUGCCGAgcUGGc -3'
miRNA:   3'- cGGUCGGCGCUAGu------GCUGUGGCU--ACC- -5'
31742 5' -55.7 NC_006938.1 + 52444 0.68 0.663028
Target:  5'- -aCAGUgaacuuCGCGGUgACGACGCCGAccGGc -3'
miRNA:   3'- cgGUCG------GCGCUAgUGCUGUGGCUa-CC- -5'
31742 5' -55.7 NC_006938.1 + 39990 0.68 0.663028
Target:  5'- aGCCAGCCGCGAggaccagcuugUCguaGACcUCGGUGcGg -3'
miRNA:   3'- -CGGUCGGCGCU-----------AGug-CUGuGGCUAC-C- -5'
31742 5' -55.7 NC_006938.1 + 38933 0.68 0.652339
Target:  5'- uGCCguGGCCGgGGUCGuaGCGCCGGaGGu -3'
miRNA:   3'- -CGG--UCGGCgCUAGUgcUGUGGCUaCC- -5'
31742 5' -55.7 NC_006938.1 + 39164 0.68 0.641633
Target:  5'- cGCCGaCCcUGGUCAUGACGCCugcuccagGAUGGa -3'
miRNA:   3'- -CGGUcGGcGCUAGUGCUGUGG--------CUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.