miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31742 5' -55.7 NC_006938.1 + 4140 0.66 0.776553
Target:  5'- aGUCGGCCG-GGUCcgGCGGCGCCa---- -3'
miRNA:   3'- -CGGUCGGCgCUAG--UGCUGUGGcuacc -5'
31742 5' -55.7 NC_006938.1 + 11172 0.71 0.484671
Target:  5'- cGCCAccGCCGCcAUCcuccuCGACGCCGA-GGc -3'
miRNA:   3'- -CGGU--CGGCGcUAGu----GCUGUGGCUaCC- -5'
31742 5' -55.7 NC_006938.1 + 12015 0.67 0.726234
Target:  5'- cGCCcucgauGGCgGCGGUUGCGAUcUCGAUGa -3'
miRNA:   3'- -CGG------UCGgCGCUAGUGCUGuGGCUACc -5'
31742 5' -55.7 NC_006938.1 + 12314 0.66 0.786234
Target:  5'- aGCUGGUCGCuGAagGCGaugaGCGCCGAgaUGGc -3'
miRNA:   3'- -CGGUCGGCG-CUagUGC----UGUGGCU--ACC- -5'
31742 5' -55.7 NC_006938.1 + 12427 0.74 0.332386
Target:  5'- gGCCGGaauggcaauCCGCGccagCugGACACCGAUGa -3'
miRNA:   3'- -CGGUC---------GGCGCua--GugCUGUGGCUACc -5'
31742 5' -55.7 NC_006938.1 + 12691 0.67 0.69489
Target:  5'- cUCGGCCGUGAUCucuccguCGGUGCCGAgcUGGc -3'
miRNA:   3'- cGGUCGGCGCUAGu------GCUGUGGCU--ACC- -5'
31742 5' -55.7 NC_006938.1 + 13645 0.66 0.785273
Target:  5'- cUCGGCCGCGcugacaugcucauGgagCGCGGCACUG-UGGc -3'
miRNA:   3'- cGGUCGGCGC-------------Ua--GUGCUGUGGCuACC- -5'
31742 5' -55.7 NC_006938.1 + 20365 0.71 0.484671
Target:  5'- gGCCGGuCCGCGAggaCACGccGCuCCGAgUGGa -3'
miRNA:   3'- -CGGUC-GGCGCUa--GUGC--UGuGGCU-ACC- -5'
31742 5' -55.7 NC_006938.1 + 21073 0.66 0.776553
Target:  5'- -aCGGCCG-GAUCACGACgACCa---- -3'
miRNA:   3'- cgGUCGGCgCUAGUGCUG-UGGcuacc -5'
31742 5' -55.7 NC_006938.1 + 21152 0.73 0.348373
Target:  5'- uCCGGCCGCG-UCGgcgaagaacuCGACGCCGA-GGa -3'
miRNA:   3'- cGGUCGGCGCuAGU----------GCUGUGGCUaCC- -5'
31742 5' -55.7 NC_006938.1 + 21854 0.67 0.726234
Target:  5'- cCCAGacgaCGUGAUCGCGuCGaucaUGAUGGa -3'
miRNA:   3'- cGGUCg---GCGCUAGUGCuGUg---GCUACC- -5'
31742 5' -55.7 NC_006938.1 + 22291 0.7 0.556425
Target:  5'- cGCCGGgaGCGcUCACGAgCGCUGGcUGGa -3'
miRNA:   3'- -CGGUCggCGCuAGUGCU-GUGGCU-ACC- -5'
31742 5' -55.7 NC_006938.1 + 22433 0.66 0.746702
Target:  5'- aGCCAGCgGgGAUgGuCG-UugCGAUGGc -3'
miRNA:   3'- -CGGUCGgCgCUAgU-GCuGugGCUACC- -5'
31742 5' -55.7 NC_006938.1 + 24837 0.67 0.705409
Target:  5'- cCCGGCCaCGGUCGCG-CGCUGcugaagagaAUGGa -3'
miRNA:   3'- cGGUCGGcGCUAGUGCuGUGGC---------UACC- -5'
31742 5' -55.7 NC_006938.1 + 25111 0.66 0.780443
Target:  5'- aGCuCGGCCGCGuUC-CGACccuguacagcaacaaGCCGcUGGc -3'
miRNA:   3'- -CG-GUCGGCGCuAGuGCUG---------------UGGCuACC- -5'
31742 5' -55.7 NC_006938.1 + 26783 0.66 0.785273
Target:  5'- uGCUGGCCcucgcacuuguacGCcAUCACGACGCC--UGGa -3'
miRNA:   3'- -CGGUCGG-------------CGcUAGUGCUGUGGcuACC- -5'
31742 5' -55.7 NC_006938.1 + 27637 0.69 0.577535
Target:  5'- cUCGGCCGCGcUgGCGAacgguGCCGAUGa -3'
miRNA:   3'- cGGUCGGCGCuAgUGCUg----UGGCUACc -5'
31742 5' -55.7 NC_006938.1 + 28382 0.72 0.425945
Target:  5'- uCCGGCCGCccuacacGGUCAaccCGGCACCGGagUGGc -3'
miRNA:   3'- cGGUCGGCG-------CUAGU---GCUGUGGCU--ACC- -5'
31742 5' -55.7 NC_006938.1 + 32853 0.7 0.556425
Target:  5'- gGgCAGCUGgGA-CAuCGugGCCGGUGGc -3'
miRNA:   3'- -CgGUCGGCgCUaGU-GCugUGGCUACC- -5'
31742 5' -55.7 NC_006938.1 + 33813 0.69 0.598816
Target:  5'- uGCgAGCCGUGGUCcCGgACAUCGugagGGa -3'
miRNA:   3'- -CGgUCGGCGCUAGuGC-UGUGGCua--CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.