miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31742 5' -55.7 NC_006938.1 + 38533 0.73 0.348373
Target:  5'- cGCCGcccugaacGCCGCGAUCGgcaacgacuCGACGCCGAa-- -3'
miRNA:   3'- -CGGU--------CGGCGCUAGU---------GCUGUGGCUacc -5'
31742 5' -55.7 NC_006938.1 + 38656 1.12 0.000865
Target:  5'- aGCCAGCCGCGAUCACGACACCGAUGGc -3'
miRNA:   3'- -CGGUCGGCGCUAGUGCUGUGGCUACC- -5'
31742 5' -55.7 NC_006938.1 + 38785 0.66 0.736518
Target:  5'- cGCCauGGCgGCGAUCGCcGCGCCcuucuugcUGGg -3'
miRNA:   3'- -CGG--UCGgCGCUAGUGcUGUGGcu------ACC- -5'
31742 5' -55.7 NC_006938.1 + 38933 0.68 0.652339
Target:  5'- uGCCguGGCCGgGGUCGuaGCGCCGGaGGu -3'
miRNA:   3'- -CGG--UCGGCgCUAGUgcUGUGGCUaCC- -5'
31742 5' -55.7 NC_006938.1 + 39164 0.68 0.641633
Target:  5'- cGCCGaCCcUGGUCAUGACGCCugcuccagGAUGGa -3'
miRNA:   3'- -CGGUcGGcGCUAGUGCUGUGG--------CUACC- -5'
31742 5' -55.7 NC_006938.1 + 39990 0.68 0.663028
Target:  5'- aGCCAGCCGCGAggaccagcuugUCguaGACcUCGGUGcGg -3'
miRNA:   3'- -CGGUCGGCGCU-----------AGug-CUGuGGCUAC-C- -5'
31742 5' -55.7 NC_006938.1 + 40128 0.71 0.484671
Target:  5'- gGUCAGCCGgGuGUCGCGGCcgaGGUGGa -3'
miRNA:   3'- -CGGUCGGCgC-UAGUGCUGuggCUACC- -5'
31742 5' -55.7 NC_006938.1 + 43231 0.66 0.766731
Target:  5'- cCCGGCCaGUGccuUCGCGGCGaacagcaCGGUGGc -3'
miRNA:   3'- cGGUCGG-CGCu--AGUGCUGUg------GCUACC- -5'
31742 5' -55.7 NC_006938.1 + 49477 0.73 0.356569
Target:  5'- aGUCGGCCGCcGUCgACGACACCGu--- -3'
miRNA:   3'- -CGGUCGGCGcUAG-UGCUGUGGCuacc -5'
31742 5' -55.7 NC_006938.1 + 50095 0.77 0.207305
Target:  5'- cGCUcaGGCCGCGAUCGuCGcCGCCGA-GGg -3'
miRNA:   3'- -CGG--UCGGCGCUAGU-GCuGUGGCUaCC- -5'
31742 5' -55.7 NC_006938.1 + 50575 0.67 0.69489
Target:  5'- gGCCAGUucuUGgGGUCACGAgACCGcccgaGGa -3'
miRNA:   3'- -CGGUCG---GCgCUAGUGCUgUGGCua---CC- -5'
31742 5' -55.7 NC_006938.1 + 51154 0.73 0.381962
Target:  5'- uCCGGCCGCGAUCGuCGcguuccgcGCGCUGAcGGc -3'
miRNA:   3'- cGGUCGGCGCUAGU-GC--------UGUGGCUaCC- -5'
31742 5' -55.7 NC_006938.1 + 51380 0.66 0.776553
Target:  5'- uGUCAGCCaggGUGAcacccuucuUCugGACAgacUCGAUGGu -3'
miRNA:   3'- -CGGUCGG---CGCU---------AGugCUGU---GGCUACC- -5'
31742 5' -55.7 NC_006938.1 + 52444 0.68 0.663028
Target:  5'- -aCAGUgaacuuCGCGGUgACGACGCCGAccGGc -3'
miRNA:   3'- cgGUCG------GCGCUAgUGCUGUGGCUa-CC- -5'
31742 5' -55.7 NC_006938.1 + 53028 0.69 0.577535
Target:  5'- cGCUcGCCGCGcaGUCugG-CACCacGGUGGa -3'
miRNA:   3'- -CGGuCGGCGC--UAGugCuGUGG--CUACC- -5'
31742 5' -55.7 NC_006938.1 + 56099 0.7 0.504762
Target:  5'- cGUC-GCCGCGccuAUCugGACuCUGAUGGc -3'
miRNA:   3'- -CGGuCGGCGC---UAGugCUGuGGCUACC- -5'
31742 5' -55.7 NC_006938.1 + 57729 0.7 0.556425
Target:  5'- cGCCuGCCGCucguuGUCACGACcgACCgugaaGAUGGc -3'
miRNA:   3'- -CGGuCGGCGc----UAGUGCUG--UGG-----CUACC- -5'
31742 5' -55.7 NC_006938.1 + 58057 0.72 0.399547
Target:  5'- uGCCAGCgGCGGguggCGCGuC-CUGGUGGu -3'
miRNA:   3'- -CGGUCGgCGCUa---GUGCuGuGGCUACC- -5'
31742 5' -55.7 NC_006938.1 + 58806 0.78 0.177219
Target:  5'- aCCAaUCGCG-UCACGAUACCGGUGGa -3'
miRNA:   3'- cGGUcGGCGCuAGUGCUGUGGCUACC- -5'
31742 5' -55.7 NC_006938.1 + 59325 0.73 0.356569
Target:  5'- uCCGGCCGUGAUCugGuagaggcggaGCACguugaCGAUGGg -3'
miRNA:   3'- cGGUCGGCGCUAGugC----------UGUG-----GCUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.