miRNA display CGI


Results 21 - 40 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31742 5' -55.7 NC_006938.1 + 11172 0.71 0.484671
Target:  5'- cGCCAccGCCGCcAUCcuccuCGACGCCGA-GGc -3'
miRNA:   3'- -CGGU--CGGCGcUAGu----GCUGUGGCUaCC- -5'
31742 5' -55.7 NC_006938.1 + 38933 0.68 0.652339
Target:  5'- uGCCguGGCCGgGGUCGuaGCGCCGGaGGu -3'
miRNA:   3'- -CGG--UCGGCgCUAGUgcUGUGGCUaCC- -5'
31742 5' -55.7 NC_006938.1 + 39164 0.68 0.641633
Target:  5'- cGCCGaCCcUGGUCAUGACGCCugcuccagGAUGGa -3'
miRNA:   3'- -CGGUcGGcGCUAGUGCUGUGG--------CUACC- -5'
31742 5' -55.7 NC_006938.1 + 27637 0.69 0.577535
Target:  5'- cUCGGCCGCGcUgGCGAacgguGCCGAUGa -3'
miRNA:   3'- cGGUCGGCGCuAgUGCUg----UGGCUACc -5'
31742 5' -55.7 NC_006938.1 + 57729 0.7 0.556425
Target:  5'- cGCCuGCCGCucguuGUCACGACcgACCgugaaGAUGGc -3'
miRNA:   3'- -CGGuCGGCGc----UAGUGCUG--UGG-----CUACC- -5'
31742 5' -55.7 NC_006938.1 + 58057 0.72 0.399547
Target:  5'- uGCCAGCgGCGGguggCGCGuC-CUGGUGGu -3'
miRNA:   3'- -CGGUCGgCGCUa---GUGCuGuGGCUACC- -5'
31742 5' -55.7 NC_006938.1 + 59325 0.73 0.356569
Target:  5'- uCCGGCCGUGAUCugGuagaggcggaGCACguugaCGAUGGg -3'
miRNA:   3'- cGGUCGGCGCUAGugC----------UGUG-----GCUACC- -5'
31742 5' -55.7 NC_006938.1 + 21152 0.73 0.348373
Target:  5'- uCCGGCCGCG-UCGgcgaagaacuCGACGCCGA-GGa -3'
miRNA:   3'- cGGUCGGCGCuAGU----------GCUGUGGCUaCC- -5'
31742 5' -55.7 NC_006938.1 + 12427 0.74 0.332386
Target:  5'- gGCCGGaauggcaauCCGCGccagCugGACACCGAUGa -3'
miRNA:   3'- -CGGUC---------GGCGCua--GugCUGUGGCUACc -5'
31742 5' -55.7 NC_006938.1 + 39990 0.68 0.663028
Target:  5'- aGCCAGCCGCGAggaccagcuugUCguaGACcUCGGUGcGg -3'
miRNA:   3'- -CGGUCGGCGCU-----------AGug-CUGuGGCUAC-C- -5'
31742 5' -55.7 NC_006938.1 + 12691 0.67 0.69489
Target:  5'- cUCGGCCGUGAUCucuccguCGGUGCCGAgcUGGc -3'
miRNA:   3'- cGGUCGGCGCUAGu------GCUGUGGCU--ACC- -5'
31742 5' -55.7 NC_006938.1 + 50575 0.67 0.69489
Target:  5'- gGCCAGUucuUGgGGUCACGAgACCGcccgaGGa -3'
miRNA:   3'- -CGGUCG---GCgCUAGUGCUgUGGCua---CC- -5'
31742 5' -55.7 NC_006938.1 + 12314 0.66 0.786234
Target:  5'- aGCUGGUCGCuGAagGCGaugaGCGCCGAgaUGGc -3'
miRNA:   3'- -CGGUCGGCG-CUagUGC----UGUGGCU--ACC- -5'
31742 5' -55.7 NC_006938.1 + 26783 0.66 0.785273
Target:  5'- uGCUGGCCcucgcacuuguacGCcAUCACGACGCC--UGGa -3'
miRNA:   3'- -CGGUCGG-------------CGcUAGUGCUGUGGcuACC- -5'
31742 5' -55.7 NC_006938.1 + 51380 0.66 0.776553
Target:  5'- uGUCAGCCaggGUGAcacccuucuUCugGACAgacUCGAUGGu -3'
miRNA:   3'- -CGGUCGG---CGCU---------AGugCUGU---GGCUACC- -5'
31742 5' -55.7 NC_006938.1 + 4140 0.66 0.776553
Target:  5'- aGUCGGCCG-GGUCcgGCGGCGCCa---- -3'
miRNA:   3'- -CGGUCGGCgCUAG--UGCUGUGGcuacc -5'
31742 5' -55.7 NC_006938.1 + 60696 0.66 0.766731
Target:  5'- cGCCAGUCGCGAccUCGgaGCGuuaUGAUGGu -3'
miRNA:   3'- -CGGUCGGCGCU--AGUgcUGUg--GCUACC- -5'
31742 5' -55.7 NC_006938.1 + 22433 0.66 0.746702
Target:  5'- aGCCAGCgGgGAUgGuCG-UugCGAUGGc -3'
miRNA:   3'- -CGGUCGgCgCUAgU-GCuGugGCUACC- -5'
31742 5' -55.7 NC_006938.1 + 38785 0.66 0.736518
Target:  5'- cGCCauGGCgGCGAUCGCcGCGCCcuucuugcUGGg -3'
miRNA:   3'- -CGG--UCGgCGCUAGUGcUGUGGcu------ACC- -5'
31742 5' -55.7 NC_006938.1 + 12015 0.67 0.726234
Target:  5'- cGCCcucgauGGCgGCGGUUGCGAUcUCGAUGa -3'
miRNA:   3'- -CGG------UCGgCGCUAGUGCUGuGGCUACc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.