Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31742 | 5' | -55.7 | NC_006938.1 | + | 13645 | 0.66 | 0.785273 |
Target: 5'- cUCGGCCGCGcugacaugcucauGgagCGCGGCACUG-UGGc -3' miRNA: 3'- cGGUCGGCGC-------------Ua--GUGCUGUGGCuACC- -5' |
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31742 | 5' | -55.7 | NC_006938.1 | + | 53028 | 0.69 | 0.577535 |
Target: 5'- cGCUcGCCGCGcaGUCugG-CACCacGGUGGa -3' miRNA: 3'- -CGGuCGGCGC--UAGugCuGUGG--CUACC- -5' |
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31742 | 5' | -55.7 | NC_006938.1 | + | 33813 | 0.69 | 0.598816 |
Target: 5'- uGCgAGCCGUGGUCcCGgACAUCGugagGGa -3' miRNA: 3'- -CGgUCGGCGCUAGuGC-UGUGGCua--CC- -5' |
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31742 | 5' | -55.7 | NC_006938.1 | + | 52444 | 0.68 | 0.663028 |
Target: 5'- -aCAGUgaacuuCGCGGUgACGACGCCGAccGGc -3' miRNA: 3'- cgGUCG------GCGCUAgUGCUGUGGCUa-CC- -5' |
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31742 | 5' | -55.7 | NC_006938.1 | + | 24837 | 0.67 | 0.705409 |
Target: 5'- cCCGGCCaCGGUCGCG-CGCUGcugaagagaAUGGa -3' miRNA: 3'- cGGUCGGcGCUAGUGCuGUGGC---------UACC- -5' |
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31742 | 5' | -55.7 | NC_006938.1 | + | 21854 | 0.67 | 0.726234 |
Target: 5'- cCCAGacgaCGUGAUCGCGuCGaucaUGAUGGa -3' miRNA: 3'- cGGUCg---GCGCUAGUGCuGUg---GCUACC- -5' |
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31742 | 5' | -55.7 | NC_006938.1 | + | 43231 | 0.66 | 0.766731 |
Target: 5'- cCCGGCCaGUGccuUCGCGGCGaacagcaCGGUGGc -3' miRNA: 3'- cGGUCGG-CGCu--AGUGCUGUg------GCUACC- -5' |
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31742 | 5' | -55.7 | NC_006938.1 | + | 21073 | 0.66 | 0.776553 |
Target: 5'- -aCGGCCG-GAUCACGACgACCa---- -3' miRNA: 3'- cgGUCGGCgCUAGUGCUG-UGGcuacc -5' |
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31742 | 5' | -55.7 | NC_006938.1 | + | 25111 | 0.66 | 0.780443 |
Target: 5'- aGCuCGGCCGCGuUC-CGACccuguacagcaacaaGCCGcUGGc -3' miRNA: 3'- -CG-GUCGGCGCuAGuGCUG---------------UGGCuACC- -5' |
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31742 | 5' | -55.7 | NC_006938.1 | + | 22291 | 0.7 | 0.556425 |
Target: 5'- cGCCGGgaGCGcUCACGAgCGCUGGcUGGa -3' miRNA: 3'- -CGGUCggCGCuAGUGCU-GUGGCU-ACC- -5' |
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31742 | 5' | -55.7 | NC_006938.1 | + | 32853 | 0.7 | 0.556425 |
Target: 5'- gGgCAGCUGgGA-CAuCGugGCCGGUGGc -3' miRNA: 3'- -CgGUCGGCgCUaGU-GCugUGGCUACC- -5' |
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31742 | 5' | -55.7 | NC_006938.1 | + | 56099 | 0.7 | 0.504762 |
Target: 5'- cGUC-GCCGCGccuAUCugGACuCUGAUGGc -3' miRNA: 3'- -CGGuCGGCGC---UAGugCUGuGGCUACC- -5' |
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31742 | 5' | -55.7 | NC_006938.1 | + | 50095 | 0.77 | 0.207305 |
Target: 5'- cGCUcaGGCCGCGAUCGuCGcCGCCGA-GGg -3' miRNA: 3'- -CGG--UCGGCGCUAGU-GCuGUGGCUaCC- -5' |
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31742 | 5' | -55.7 | NC_006938.1 | + | 38533 | 0.73 | 0.348373 |
Target: 5'- cGCCGcccugaacGCCGCGAUCGgcaacgacuCGACGCCGAa-- -3' miRNA: 3'- -CGGU--------CGGCGCUAGU---------GCUGUGGCUacc -5' |
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31742 | 5' | -55.7 | NC_006938.1 | + | 49477 | 0.73 | 0.356569 |
Target: 5'- aGUCGGCCGCcGUCgACGACACCGu--- -3' miRNA: 3'- -CGGUCGGCGcUAG-UGCUGUGGCuacc -5' |
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31742 | 5' | -55.7 | NC_006938.1 | + | 51154 | 0.73 | 0.381962 |
Target: 5'- uCCGGCCGCGAUCGuCGcguuccgcGCGCUGAcGGc -3' miRNA: 3'- cGGUCGGCGCUAGU-GC--------UGUGGCUaCC- -5' |
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31742 | 5' | -55.7 | NC_006938.1 | + | 28382 | 0.72 | 0.425945 |
Target: 5'- uCCGGCCGCccuacacGGUCAaccCGGCACCGGagUGGc -3' miRNA: 3'- cGGUCGGCG-------CUAGU---GCUGUGGCU--ACC- -5' |
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31742 | 5' | -55.7 | NC_006938.1 | + | 20365 | 0.71 | 0.484671 |
Target: 5'- gGCCGGuCCGCGAggaCACGccGCuCCGAgUGGa -3' miRNA: 3'- -CGGUC-GGCGCUa--GUGC--UGuGGCU-ACC- -5' |
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31742 | 5' | -55.7 | NC_006938.1 | + | 40128 | 0.71 | 0.484671 |
Target: 5'- gGUCAGCCGgGuGUCGCGGCcgaGGUGGa -3' miRNA: 3'- -CGGUCGGCgC-UAGUGCUGuggCUACC- -5' |
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31742 | 5' | -55.7 | NC_006938.1 | + | 11172 | 0.71 | 0.484671 |
Target: 5'- cGCCAccGCCGCcAUCcuccuCGACGCCGA-GGc -3' miRNA: 3'- -CGGU--CGGCGcUAGu----GCUGUGGCUaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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