miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31742 5' -55.7 NC_006938.1 + 13645 0.66 0.785273
Target:  5'- cUCGGCCGCGcugacaugcucauGgagCGCGGCACUG-UGGc -3'
miRNA:   3'- cGGUCGGCGC-------------Ua--GUGCUGUGGCuACC- -5'
31742 5' -55.7 NC_006938.1 + 53028 0.69 0.577535
Target:  5'- cGCUcGCCGCGcaGUCugG-CACCacGGUGGa -3'
miRNA:   3'- -CGGuCGGCGC--UAGugCuGUGG--CUACC- -5'
31742 5' -55.7 NC_006938.1 + 33813 0.69 0.598816
Target:  5'- uGCgAGCCGUGGUCcCGgACAUCGugagGGa -3'
miRNA:   3'- -CGgUCGGCGCUAGuGC-UGUGGCua--CC- -5'
31742 5' -55.7 NC_006938.1 + 52444 0.68 0.663028
Target:  5'- -aCAGUgaacuuCGCGGUgACGACGCCGAccGGc -3'
miRNA:   3'- cgGUCG------GCGCUAgUGCUGUGGCUa-CC- -5'
31742 5' -55.7 NC_006938.1 + 24837 0.67 0.705409
Target:  5'- cCCGGCCaCGGUCGCG-CGCUGcugaagagaAUGGa -3'
miRNA:   3'- cGGUCGGcGCUAGUGCuGUGGC---------UACC- -5'
31742 5' -55.7 NC_006938.1 + 21854 0.67 0.726234
Target:  5'- cCCAGacgaCGUGAUCGCGuCGaucaUGAUGGa -3'
miRNA:   3'- cGGUCg---GCGCUAGUGCuGUg---GCUACC- -5'
31742 5' -55.7 NC_006938.1 + 43231 0.66 0.766731
Target:  5'- cCCGGCCaGUGccuUCGCGGCGaacagcaCGGUGGc -3'
miRNA:   3'- cGGUCGG-CGCu--AGUGCUGUg------GCUACC- -5'
31742 5' -55.7 NC_006938.1 + 21073 0.66 0.776553
Target:  5'- -aCGGCCG-GAUCACGACgACCa---- -3'
miRNA:   3'- cgGUCGGCgCUAGUGCUG-UGGcuacc -5'
31742 5' -55.7 NC_006938.1 + 25111 0.66 0.780443
Target:  5'- aGCuCGGCCGCGuUC-CGACccuguacagcaacaaGCCGcUGGc -3'
miRNA:   3'- -CG-GUCGGCGCuAGuGCUG---------------UGGCuACC- -5'
31742 5' -55.7 NC_006938.1 + 22291 0.7 0.556425
Target:  5'- cGCCGGgaGCGcUCACGAgCGCUGGcUGGa -3'
miRNA:   3'- -CGGUCggCGCuAGUGCU-GUGGCU-ACC- -5'
31742 5' -55.7 NC_006938.1 + 32853 0.7 0.556425
Target:  5'- gGgCAGCUGgGA-CAuCGugGCCGGUGGc -3'
miRNA:   3'- -CgGUCGGCgCUaGU-GCugUGGCUACC- -5'
31742 5' -55.7 NC_006938.1 + 56099 0.7 0.504762
Target:  5'- cGUC-GCCGCGccuAUCugGACuCUGAUGGc -3'
miRNA:   3'- -CGGuCGGCGC---UAGugCUGuGGCUACC- -5'
31742 5' -55.7 NC_006938.1 + 50095 0.77 0.207305
Target:  5'- cGCUcaGGCCGCGAUCGuCGcCGCCGA-GGg -3'
miRNA:   3'- -CGG--UCGGCGCUAGU-GCuGUGGCUaCC- -5'
31742 5' -55.7 NC_006938.1 + 38533 0.73 0.348373
Target:  5'- cGCCGcccugaacGCCGCGAUCGgcaacgacuCGACGCCGAa-- -3'
miRNA:   3'- -CGGU--------CGGCGCUAGU---------GCUGUGGCUacc -5'
31742 5' -55.7 NC_006938.1 + 49477 0.73 0.356569
Target:  5'- aGUCGGCCGCcGUCgACGACACCGu--- -3'
miRNA:   3'- -CGGUCGGCGcUAG-UGCUGUGGCuacc -5'
31742 5' -55.7 NC_006938.1 + 51154 0.73 0.381962
Target:  5'- uCCGGCCGCGAUCGuCGcguuccgcGCGCUGAcGGc -3'
miRNA:   3'- cGGUCGGCGCUAGU-GC--------UGUGGCUaCC- -5'
31742 5' -55.7 NC_006938.1 + 28382 0.72 0.425945
Target:  5'- uCCGGCCGCccuacacGGUCAaccCGGCACCGGagUGGc -3'
miRNA:   3'- cGGUCGGCG-------CUAGU---GCUGUGGCU--ACC- -5'
31742 5' -55.7 NC_006938.1 + 20365 0.71 0.484671
Target:  5'- gGCCGGuCCGCGAggaCACGccGCuCCGAgUGGa -3'
miRNA:   3'- -CGGUC-GGCGCUa--GUGC--UGuGGCU-ACC- -5'
31742 5' -55.7 NC_006938.1 + 40128 0.71 0.484671
Target:  5'- gGUCAGCCGgGuGUCGCGGCcgaGGUGGa -3'
miRNA:   3'- -CGGUCGGCgC-UAGUGCUGuggCUACC- -5'
31742 5' -55.7 NC_006938.1 + 11172 0.71 0.484671
Target:  5'- cGCCAccGCCGCcAUCcuccuCGACGCCGA-GGc -3'
miRNA:   3'- -CGGU--CGGCGcUAGu----GCUGUGGCUaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.