Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31747 | 5' | -59.5 | NC_006938.1 | + | 12773 | 0.67 | 0.490778 |
Target: 5'- -aCCGCuGgGAGCuGCuCCAGGaCGGAGCg -3' miRNA: 3'- cgGGCG-CgCUUG-CG-GGUCC-GUCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 7125 | 0.67 | 0.480912 |
Target: 5'- uGUCCGCGuCGAGgaGCCCAaGGUcgucGAACUg -3' miRNA: 3'- -CGGGCGC-GCUUg-CGGGU-CCGu---CUUGA- -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 28668 | 0.67 | 0.477971 |
Target: 5'- gGCCgGgGCGAACGUguugucgacgaaguCCAGGUuGGGCg -3' miRNA: 3'- -CGGgCgCGCUUGCG--------------GGUCCGuCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 31364 | 0.67 | 0.471144 |
Target: 5'- cCCUGgGCcacGggUGCCguGGUAGAGCa -3' miRNA: 3'- cGGGCgCG---CuuGCGGguCCGUCUUGa -5' |
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31747 | 5' | -59.5 | NC_006938.1 | + | 13513 | 0.66 | 0.551743 |
Target: 5'- aCCCGCGcCGGGCacaaagGCCUcucgcguuccagAGGCGGGGCc -3' miRNA: 3'- cGGGCGC-GCUUG------CGGG------------UCCGUCUUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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