miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31753 5' -58.1 NC_006938.1 + 53247 0.66 0.591986
Target:  5'- cCUUGGCaCCGCCcUCCCaggcGCGGAa--- -3'
miRNA:   3'- aGAGCCG-GGUGGuAGGG----UGCCUcuug -5'
31753 5' -58.1 NC_006938.1 + 54296 0.66 0.591986
Target:  5'- -aUCGGCaagCGCCGUUCCAacggUGGAGAcgACa -3'
miRNA:   3'- agAGCCGg--GUGGUAGGGU----GCCUCU--UG- -5'
31753 5' -58.1 NC_006938.1 + 4254 0.66 0.590922
Target:  5'- --aCGGCCggauaccUGCCGUUCCA-GGAGGACg -3'
miRNA:   3'- agaGCCGG-------GUGGUAGGGUgCCUCUUG- -5'
31753 5' -58.1 NC_006938.1 + 3430 0.66 0.570782
Target:  5'- --cCGcGCCCACCuGUCUaGCGGAGAucACa -3'
miRNA:   3'- agaGC-CGGGUGG-UAGGgUGCCUCU--UG- -5'
31753 5' -58.1 NC_006938.1 + 8157 0.66 0.570782
Target:  5'- aCUCGGCCgugCACCGauuugggacgCCaAUGGAGGACa -3'
miRNA:   3'- aGAGCCGG---GUGGUa---------GGgUGCCUCUUG- -5'
31753 5' -58.1 NC_006938.1 + 32560 0.67 0.557098
Target:  5'- uUCUCGGCUCuCCAUCCUGCaacuucgucauguuGGAcugauGGACg -3'
miRNA:   3'- -AGAGCCGGGuGGUAGGGUG--------------CCU-----CUUG- -5'
31753 5' -58.1 NC_006938.1 + 23081 0.67 0.539349
Target:  5'- gUUCGGCUgGCCcuggucGUCCguCGGAGGAg -3'
miRNA:   3'- aGAGCCGGgUGG------UAGGguGCCUCUUg -5'
31753 5' -58.1 NC_006938.1 + 20143 0.67 0.518722
Target:  5'- -----cCCCGCC-UCCCACGGGGAGg -3'
miRNA:   3'- agagccGGGUGGuAGGGUGCCUCUUg -5'
31753 5' -58.1 NC_006938.1 + 35052 0.67 0.518722
Target:  5'- gUCUUGGCCgAgCGgcgcuUgCCACGGAGGAg -3'
miRNA:   3'- -AGAGCCGGgUgGU-----AgGGUGCCUCUUg -5'
31753 5' -58.1 NC_006938.1 + 10271 0.67 0.508525
Target:  5'- -gUCGcGCCUGaCAUgCCCugGGAGGACu -3'
miRNA:   3'- agAGC-CGGGUgGUA-GGGugCCUCUUG- -5'
31753 5' -58.1 NC_006938.1 + 24417 0.68 0.498414
Target:  5'- -gUCGGCgacauccuCUACCGUCUCACGuGGGACa -3'
miRNA:   3'- agAGCCG--------GGUGGUAGGGUGCcUCUUG- -5'
31753 5' -58.1 NC_006938.1 + 40940 0.68 0.478469
Target:  5'- gCUCGGCUCGacCCGcCCCGCGauGGGAAUg -3'
miRNA:   3'- aGAGCCGGGU--GGUaGGGUGC--CUCUUG- -5'
31753 5' -58.1 NC_006938.1 + 43869 0.68 0.478469
Target:  5'- ---gGGUCCugCAgaaCCCuCGGAGGACa -3'
miRNA:   3'- agagCCGGGugGUa--GGGuGCCUCUUG- -5'
31753 5' -58.1 NC_006938.1 + 29 0.68 0.478469
Target:  5'- gCUCGa-CCACCGUCgaCGCGGAGAGu -3'
miRNA:   3'- aGAGCcgGGUGGUAGg-GUGCCUCUUg -5'
31753 5' -58.1 NC_006938.1 + 12643 0.68 0.458925
Target:  5'- gUCUCGGUCCaggcccucgGCCGcCUCGCGGAaGGCg -3'
miRNA:   3'- -AGAGCCGGG---------UGGUaGGGUGCCUcUUG- -5'
31753 5' -58.1 NC_006938.1 + 11199 0.69 0.434169
Target:  5'- cCUCGGCUgAcCCGUgCCACGGgccgguuguugaucgAGAGCa -3'
miRNA:   3'- aGAGCCGGgU-GGUAgGGUGCC---------------UCUUG- -5'
31753 5' -58.1 NC_006938.1 + 13644 0.69 0.43043
Target:  5'- aCUCGGCCgCGCUgacaugCUCAUGGAGcGCg -3'
miRNA:   3'- aGAGCCGG-GUGGua----GGGUGCCUCuUG- -5'
31753 5' -58.1 NC_006938.1 + 39124 0.69 0.41202
Target:  5'- -aUCGGCuCCGCCAaggUCCCGaccgaGGuGGAACg -3'
miRNA:   3'- agAGCCG-GGUGGU---AGGGUg----CC-UCUUG- -5'
31753 5' -58.1 NC_006938.1 + 30500 0.69 0.41202
Target:  5'- aCUCGG-CCACCcuguacagGUCgCCACGGAcgGAGCu -3'
miRNA:   3'- aGAGCCgGGUGG--------UAG-GGUGCCU--CUUG- -5'
31753 5' -58.1 NC_006938.1 + 5947 0.7 0.38534
Target:  5'- --gCGGUCCGCuCGUUCCagGCGGAGAAg -3'
miRNA:   3'- agaGCCGGGUG-GUAGGG--UGCCUCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.