miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31763 3' -56.7 NC_006938.1 + 24362 0.66 0.695633
Target:  5'- uGGACGgGGAgcacccuCAGCG-CGuguccauCCUGGAGCa -3'
miRNA:   3'- cUCUGCgCUU-------GUCGCuGC-------GGACCUCG- -5'
31763 3' -56.7 NC_006938.1 + 50591 0.66 0.676432
Target:  5'- aGAGACggGCGAGCuauauGCG-CGgCUGGcGCa -3'
miRNA:   3'- -CUCUG--CGCUUGu----CGCuGCgGACCuCG- -5'
31763 3' -56.7 NC_006938.1 + 57023 0.66 0.676432
Target:  5'- aGGGCGCGuuugucuauGACGGUGACGC--GGAGg -3'
miRNA:   3'- cUCUGCGC---------UUGUCGCUGCGgaCCUCg -5'
31763 3' -56.7 NC_006938.1 + 5208 0.66 0.665704
Target:  5'- aGGGGCGCGGcccACAGgGGaGUCUaGAGCg -3'
miRNA:   3'- -CUCUGCGCU---UGUCgCUgCGGAcCUCG- -5'
31763 3' -56.7 NC_006938.1 + 22049 0.66 0.654946
Target:  5'- aGGACGCcacgucagcaggGAGCGgcugcGCGGCgGCCUGG-GCa -3'
miRNA:   3'- cUCUGCG------------CUUGU-----CGCUG-CGGACCuCG- -5'
31763 3' -56.7 NC_006938.1 + 36664 0.67 0.644168
Target:  5'- ---cUGUGAugAGCGGCuucggaGCCUGGAGa -3'
miRNA:   3'- cucuGCGCUugUCGCUG------CGGACCUCg -5'
31763 3' -56.7 NC_006938.1 + 62555 0.67 0.644168
Target:  5'- -cGACGCGu-CGGCGGC-CgaGGAGUu -3'
miRNA:   3'- cuCUGCGCuuGUCGCUGcGgaCCUCG- -5'
31763 3' -56.7 NC_006938.1 + 29639 0.67 0.644168
Target:  5'- -uGACuCGuugcGCAGCGugGCCUucucgcggaGGGGCu -3'
miRNA:   3'- cuCUGcGCu---UGUCGCugCGGA---------CCUCG- -5'
31763 3' -56.7 NC_006938.1 + 29867 0.67 0.633379
Target:  5'- uGGACGCG-GCuGUGAUGgCCgagcGGAGCc -3'
miRNA:   3'- cUCUGCGCuUGuCGCUGC-GGa---CCUCG- -5'
31763 3' -56.7 NC_006938.1 + 28206 0.67 0.611807
Target:  5'- cAGACGacgaGAGC-GCGGCGCggaucuggaUGGGGCa -3'
miRNA:   3'- cUCUGCg---CUUGuCGCUGCGg--------ACCUCG- -5'
31763 3' -56.7 NC_006938.1 + 17554 0.67 0.611807
Target:  5'- -cGACaugaGAACGGCGACaaCCUGGAcGCg -3'
miRNA:   3'- cuCUGcg--CUUGUCGCUGc-GGACCU-CG- -5'
31763 3' -56.7 NC_006938.1 + 27576 0.67 0.61073
Target:  5'- uGAGACGaguGGACAcccacagcgccacGCGGCGCUggaacaacaGGAGCg -3'
miRNA:   3'- -CUCUGCg--CUUGU-------------CGCUGCGGa--------CCUCG- -5'
31763 3' -56.7 NC_006938.1 + 9711 0.67 0.601042
Target:  5'- -cGGCucCGAACugagccuGUGugGUCUGGAGCg -3'
miRNA:   3'- cuCUGc-GCUUGu------CGCugCGGACCUCG- -5'
31763 3' -56.7 NC_006938.1 + 27649 0.67 0.601042
Target:  5'- ----gGCGAACGGUGccgaugacGCGCCUGGcgauGGCa -3'
miRNA:   3'- cucugCGCUUGUCGC--------UGCGGACC----UCG- -5'
31763 3' -56.7 NC_006938.1 + 25521 0.68 0.579597
Target:  5'- aGGGugGCuGGAaGGCacaccucauCGCCUGGGGCa -3'
miRNA:   3'- -CUCugCG-CUUgUCGcu-------GCGGACCUCG- -5'
31763 3' -56.7 NC_006938.1 + 8376 0.68 0.568934
Target:  5'- cGGACGC--GCAG-GACGCCggGGAGa -3'
miRNA:   3'- cUCUGCGcuUGUCgCUGCGGa-CCUCg -5'
31763 3' -56.7 NC_006938.1 + 15065 0.68 0.547762
Target:  5'- --aACGCGAAgAGUGGCGa-UGGGGCc -3'
miRNA:   3'- cucUGCGCUUgUCGCUGCggACCUCG- -5'
31763 3' -56.7 NC_006938.1 + 41282 0.68 0.537268
Target:  5'- uGAG-CGCuccCGGCGACgGCCUGGcaGGCg -3'
miRNA:   3'- -CUCuGCGcuuGUCGCUG-CGGACC--UCG- -5'
31763 3' -56.7 NC_006938.1 + 60149 0.68 0.536223
Target:  5'- uGGGCGCgGGGCAGaCGAccauuguCGCC-GGAGCc -3'
miRNA:   3'- cUCUGCG-CUUGUC-GCU-------GCGGaCCUCG- -5'
31763 3' -56.7 NC_006938.1 + 58888 0.68 0.526845
Target:  5'- aGAGACGaCGAuCAaCGACGCCaacgGuGAGCu -3'
miRNA:   3'- -CUCUGC-GCUuGUcGCUGCGGa---C-CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.