Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31778 | 3' | -56.1 | NC_006938.1 | + | 55720 | 0.66 | 0.738047 |
Target: 5'- --uGGacaUGGCCCUGuccuUCGGGGcuGGACCg -3' miRNA: 3'- gauCCg--ACUGGGGC----AGCUCCu-UCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 35180 | 0.66 | 0.738047 |
Target: 5'- -cGGGUUGACCgUGU--AGGgcGGCCg -3' miRNA: 3'- gaUCCGACUGGgGCAgcUCCuuCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 43393 | 0.66 | 0.738047 |
Target: 5'- ------cGGCCUCGUCGAacaugauccGGGAGACCu -3' miRNA: 3'- gauccgaCUGGGGCAGCU---------CCUUCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 46719 | 0.66 | 0.738047 |
Target: 5'- -gAGGCgcACUCCaaCGAGGAAGcACCa -3' miRNA: 3'- gaUCCGacUGGGGcaGCUCCUUC-UGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 17655 | 0.66 | 0.731875 |
Target: 5'- -gAGGCUccgaucagGACCUCGaaguccgccgucagCGAGGAcaGGGCCg -3' miRNA: 3'- gaUCCGA--------CUGGGGCa-------------GCUCCU--UCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 43637 | 0.66 | 0.727741 |
Target: 5'- -gAGGCcacacugGAgCCCGUCGucuuGGAGGgaACCu -3' miRNA: 3'- gaUCCGa------CUgGGGCAGCu---CCUUC--UGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 22793 | 0.66 | 0.727741 |
Target: 5'- --cGGCcuUGACaCCGUCGAGGucccgguuGGGCUg -3' miRNA: 3'- gauCCG--ACUGgGGCAGCUCCu-------UCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 1658 | 0.66 | 0.717343 |
Target: 5'- -gGGGCcGACCuCCGaCGAcaaGGAcaAGGCCu -3' miRNA: 3'- gaUCCGaCUGG-GGCaGCU---CCU--UCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 5129 | 0.66 | 0.706866 |
Target: 5'- --cGGCccagGACCCUGUCucuucggaGAcGGGAGACUg -3' miRNA: 3'- gauCCGa---CUGGGGCAG--------CU-CCUUCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 47480 | 0.66 | 0.706866 |
Target: 5'- ---cGCUcaGACCUCGUCGuGGuuGGGGCCa -3' miRNA: 3'- gaucCGA--CUGGGGCAGCuCC--UUCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 17765 | 0.67 | 0.685711 |
Target: 5'- ---cGCUcGACUCCGUCGccGggGACUg -3' miRNA: 3'- gaucCGA-CUGGGGCAGCucCuuCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 27 | 0.67 | 0.675055 |
Target: 5'- --uGGCUcGACCaCCGUCGAcGcGGAGaguGCCa -3' miRNA: 3'- gauCCGA-CUGG-GGCAGCU-C-CUUC---UGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 5346 | 0.67 | 0.675055 |
Target: 5'- aUAGGCgaucACCUCccagacguugGUCGuGGGAGACCc -3' miRNA: 3'- gAUCCGac--UGGGG----------CAGCuCCUUCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 28702 | 0.67 | 0.675055 |
Target: 5'- uUGGGCgUGACCaCCaccuccUCGGGGuuGGCCc -3' miRNA: 3'- gAUCCG-ACUGG-GGc-----AGCUCCuuCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 56647 | 0.67 | 0.675055 |
Target: 5'- -gGGGaacGGCCCCGgcugggGAGGcAAGGCCg -3' miRNA: 3'- gaUCCga-CUGGGGCag----CUCC-UUCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 23236 | 0.67 | 0.675055 |
Target: 5'- aUGGGCgGACCCU-UCGAGuGGucggcGACCg -3' miRNA: 3'- gAUCCGaCUGGGGcAGCUC-CUu----CUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 33324 | 0.67 | 0.653638 |
Target: 5'- -aAGcGC--GCCggGUCGAGGAAGACCg -3' miRNA: 3'- gaUC-CGacUGGggCAGCUCCUUCUGG- -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 25582 | 0.68 | 0.620318 |
Target: 5'- cCUGGGCUucuucGCCgCCGUgucaacacucaacUGAGGAGGACa -3' miRNA: 3'- -GAUCCGAc----UGG-GGCA-------------GCUCCUUCUGg -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 30798 | 0.68 | 0.589226 |
Target: 5'- --cGGCUGugCCU--UGAGGAGGAUg -3' miRNA: 3'- gauCCGACugGGGcaGCUCCUUCUGg -5' |
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31778 | 3' | -56.1 | NC_006938.1 | + | 23084 | 0.68 | 0.589226 |
Target: 5'- --cGGCUGGCCCUGgUCGuccgucGGAGGAgUg -3' miRNA: 3'- gauCCGACUGGGGC-AGCu-----CCUUCUgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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