miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31790 3' -62.3 NC_006938.1 + 27049 0.66 0.412842
Target:  5'- cGCGCCGGGGcaguGCCACacuccggagggaCAGGcccaggucacgggcCGCGCCGg -3'
miRNA:   3'- -UGCGGCUCC----UGGUG------------GUCCu-------------GCGCGGU- -5'
31790 3' -62.3 NC_006938.1 + 29306 0.66 0.412842
Target:  5'- gACGCCaccGGGACggagacgacaucaugCGCCGGGugGUGCgCGa -3'
miRNA:   3'- -UGCGGc--UCCUG---------------GUGGUCCugCGCG-GU- -5'
31790 3' -62.3 NC_006938.1 + 37988 0.66 0.409312
Target:  5'- cCGCCGcccugagacgcGGGCCACCAGuGugGgCGCUu -3'
miRNA:   3'- uGCGGCu----------CCUGGUGGUC-CugC-GCGGu -5'
31790 3' -62.3 NC_006938.1 + 51979 0.66 0.409312
Target:  5'- gACGUgGAGGACCucgcagagACCGuGGACGaGUCAu -3'
miRNA:   3'- -UGCGgCUCCUGG--------UGGU-CCUGCgCGGU- -5'
31790 3' -62.3 NC_006938.1 + 26168 0.66 0.409312
Target:  5'- uUGCCGGGGACUccuccgcgcgACCAGcugccACGCaGCCGg -3'
miRNA:   3'- uGCGGCUCCUGG----------UGGUCc----UGCG-CGGU- -5'
31790 3' -62.3 NC_006938.1 + 46000 0.66 0.409312
Target:  5'- cCGCCGAGGcuCCgAUCAGGACcucgaagucCGCCGu -3'
miRNA:   3'- uGCGGCUCCu-GG-UGGUCCUGc--------GCGGU- -5'
31790 3' -62.3 NC_006938.1 + 15737 0.66 0.400572
Target:  5'- cCGCUGAuGuCCGcguCCGGGGuCGCGCCAg -3'
miRNA:   3'- uGCGGCUcCuGGU---GGUCCU-GCGCGGU- -5'
31790 3' -62.3 NC_006938.1 + 35649 0.66 0.400572
Target:  5'- cCGCCGAGGugUggcGCgAGGAgaugcugucCGuCGCCAg -3'
miRNA:   3'- uGCGGCUCCugG---UGgUCCU---------GC-GCGGU- -5'
31790 3' -62.3 NC_006938.1 + 18086 0.66 0.400572
Target:  5'- aGCGaCGaAGGAgCGUCGGGACGCGuCCGa -3'
miRNA:   3'- -UGCgGC-UCCUgGUGGUCCUGCGC-GGU- -5'
31790 3' -62.3 NC_006938.1 + 12699 0.66 0.391952
Target:  5'- cGCGCC-AGuGACCcacgggucaCGGGACuGCGCCAg -3'
miRNA:   3'- -UGCGGcUC-CUGGug-------GUCCUG-CGCGGU- -5'
31790 3' -62.3 NC_006938.1 + 12847 0.66 0.38939
Target:  5'- aACGCCGAcgacaucgaccuguGGGCCaauccuggACCAGG-CGCucGCCGg -3'
miRNA:   3'- -UGCGGCU--------------CCUGG--------UGGUCCuGCG--CGGU- -5'
31790 3' -62.3 NC_006938.1 + 18250 0.66 0.383453
Target:  5'- -gGCaCGAGGGCCACUgcgaGGuGAC-CGCCGc -3'
miRNA:   3'- ugCG-GCUCCUGGUGG----UC-CUGcGCGGU- -5'
31790 3' -62.3 NC_006938.1 + 46667 0.66 0.383453
Target:  5'- -aGCUGGGGAgCGCgGGGcCGUGUCGc -3'
miRNA:   3'- ugCGGCUCCUgGUGgUCCuGCGCGGU- -5'
31790 3' -62.3 NC_006938.1 + 35977 0.66 0.375078
Target:  5'- aACGCCGAGG-CCAUCAcu-CGCaccGCCAu -3'
miRNA:   3'- -UGCGGCUCCuGGUGGUccuGCG---CGGU- -5'
31790 3' -62.3 NC_006938.1 + 35593 0.66 0.375078
Target:  5'- gGCGUCGAGGAUCuCgAaGAUGCGCUg -3'
miRNA:   3'- -UGCGGCUCCUGGuGgUcCUGCGCGGu -5'
31790 3' -62.3 NC_006938.1 + 18703 0.67 0.366828
Target:  5'- uCGUCucGGuacuucugcGCCGCCucGGACGCGCCGg -3'
miRNA:   3'- uGCGGcuCC---------UGGUGGu-CCUGCGCGGU- -5'
31790 3' -62.3 NC_006938.1 + 18821 0.67 0.358703
Target:  5'- -gGUCGcGGGCgACgAGGGCGCGCg- -3'
miRNA:   3'- ugCGGCuCCUGgUGgUCCUGCGCGgu -5'
31790 3' -62.3 NC_006938.1 + 2836 0.67 0.358703
Target:  5'- cCGCCGAGuaGACCccguCCAGGAUgGCGgCGg -3'
miRNA:   3'- uGCGGCUC--CUGGu---GGUCCUG-CGCgGU- -5'
31790 3' -62.3 NC_006938.1 + 31700 0.67 0.358703
Target:  5'- cGCGCaGAccGGCCGCaAGGGCGCGUCAg -3'
miRNA:   3'- -UGCGgCUc-CUGGUGgUCCUGCGCGGU- -5'
31790 3' -62.3 NC_006938.1 + 3602 0.67 0.350705
Target:  5'- cCGCCGuGG--UACCAGGcCGCGUCGa -3'
miRNA:   3'- uGCGGCuCCugGUGGUCCuGCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.