miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31790 5' -56.3 NC_006938.1 + 63611 0.78 0.140604
Target:  5'- gGGCAGC--UGCCAGugcGGuCCGUCCUUGAa -3'
miRNA:   3'- -CCGUCGuuACGGUU---CC-GGCAGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 61013 0.68 0.568999
Target:  5'- aGGaacucuGgAGUGCUGAGGUccgCGUCCUCGAa -3'
miRNA:   3'- -CCgu----CgUUACGGUUCCG---GCAGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 54409 0.68 0.558302
Target:  5'- cGCGGCcggaGUCGAGGCCaccacuGUCCUCGc -3'
miRNA:   3'- cCGUCGuua-CGGUUCCGG------CAGGAGCu -5'
31790 5' -56.3 NC_006938.1 + 54115 0.71 0.399012
Target:  5'- cGGCAGCuuUGCCAAc-CUGUCCUCu- -3'
miRNA:   3'- -CCGUCGuuACGGUUccGGCAGGAGcu -5'
31790 5' -56.3 NC_006938.1 + 52027 0.66 0.677334
Target:  5'- gGGCGGCAccGCCGAGcccaccGCCG-CCU-GAc -3'
miRNA:   3'- -CCGUCGUuaCGGUUC------CGGCaGGAgCU- -5'
31790 5' -56.3 NC_006938.1 + 51497 0.67 0.633951
Target:  5'- uGGCAGCGGcgGCgAuGGCCGgccacacgCuCUCGAa -3'
miRNA:   3'- -CCGUCGUUa-CGgUuCCGGCa-------G-GAGCU- -5'
31790 5' -56.3 NC_006938.1 + 51266 0.66 0.666526
Target:  5'- uGGCGGCGAUGgCA--GCCGUCagcgcgCGGa -3'
miRNA:   3'- -CCGUCGUUACgGUucCGGCAGga----GCU- -5'
31790 5' -56.3 NC_006938.1 + 48654 0.68 0.547662
Target:  5'- uGGaGGCGA--CCAAGGCCGUCCg-GAa -3'
miRNA:   3'- -CCgUCGUUacGGUUCCGGCAGGagCU- -5'
31790 5' -56.3 NC_006938.1 + 48494 0.68 0.590536
Target:  5'- aGGUguuGUAG-GCCGuGGCCG-CCUCGAu -3'
miRNA:   3'- -CCGu--CGUUaCGGUuCCGGCaGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 48352 0.66 0.666526
Target:  5'- gGGCGGCGGUGaCGAGcGC-GUCCugUCGGa -3'
miRNA:   3'- -CCGUCGUUACgGUUC-CGgCAGG--AGCU- -5'
31790 5' -56.3 NC_006938.1 + 47010 0.66 0.666526
Target:  5'- gGGUGGCAAcgacgcUGCCcugggcGGCCGaaUCUUCGAg -3'
miRNA:   3'- -CCGUCGUU------ACGGuu----CCGGC--AGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 46671 0.69 0.495566
Target:  5'- cGGCAGCuggggaGCgCGGGGCCGUgucgCCUCu- -3'
miRNA:   3'- -CCGUCGuua---CG-GUUCCGGCA----GGAGcu -5'
31790 5' -56.3 NC_006938.1 + 45966 0.66 0.677334
Target:  5'- cGuCAGCGAggaCAGGGCCGUCCg--- -3'
miRNA:   3'- cC-GUCGUUacgGUUCCGGCAGGagcu -5'
31790 5' -56.3 NC_006938.1 + 45793 0.66 0.677334
Target:  5'- cGGCAaCAagGCCGAGGCCcgugccacGUUCUCc- -3'
miRNA:   3'- -CCGUcGUuaCGGUUCCGG--------CAGGAGcu -5'
31790 5' -56.3 NC_006938.1 + 44954 0.66 0.688101
Target:  5'- cGGgAGCcGUGCCAAGGUggacuguuccacUGUCUgCGAu -3'
miRNA:   3'- -CCgUCGuUACGGUUCCG------------GCAGGaGCU- -5'
31790 5' -56.3 NC_006938.1 + 41573 0.66 0.698816
Target:  5'- cGCGGCg--GCCuGGGCaaaGUCCcCGAc -3'
miRNA:   3'- cCGUCGuuaCGGuUCCGg--CAGGaGCU- -5'
31790 5' -56.3 NC_006938.1 + 40760 0.75 0.229755
Target:  5'- cGCAGCccaaccgggaccucgAcgGUGUCAAGGCCGUCCUCc- -3'
miRNA:   3'- cCGUCG---------------U--UACGGUUCCGGCAGGAGcu -5'
31790 5' -56.3 NC_006938.1 + 40571 0.66 0.655685
Target:  5'- gGGUucGGCug-GCCcuGGUCGUCCgUCGGa -3'
miRNA:   3'- -CCG--UCGuuaCGGuuCCGGCAGG-AGCU- -5'
31790 5' -56.3 NC_006938.1 + 39543 0.66 0.6546
Target:  5'- cGGUGGCAcgGCCAccGcucgcacggucucGGCCGUCgacuuCUCGGa -3'
miRNA:   3'- -CCGUCGUuaCGGU--U-------------CCGGCAG-----GAGCU- -5'
31790 5' -56.3 NC_006938.1 + 39108 0.68 0.547662
Target:  5'- aGCGGCAGUGCCAuucGGCaugccaUCgUCGAc -3'
miRNA:   3'- cCGUCGUUACGGUu--CCGgc----AGgAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.