miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31792 5' -54.6 NC_006938.1 + 6209 1.13 0.000783
Target:  5'- cUCGGAGCUGGUCGAGGAGAACAAGGCg -3'
miRNA:   3'- -AGCCUCGACCAGCUCCUCUUGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 35007 0.78 0.203352
Target:  5'- aCGGAGCUGGacuUCGAGGAGGAgAuccGCa -3'
miRNA:   3'- aGCCUCGACC---AGCUCCUCUUgUuc-CG- -5'
31792 5' -54.6 NC_006938.1 + 27456 0.77 0.225865
Target:  5'- gCGGAGC-GGcCGAGGAGcACGAGGa -3'
miRNA:   3'- aGCCUCGaCCaGCUCCUCuUGUUCCg -5'
31792 5' -54.6 NC_006938.1 + 3426 0.76 0.28354
Target:  5'- cCGGGaCUGGgUCGAGGAGGGCuucaagaAGGGCg -3'
miRNA:   3'- aGCCUcGACC-AGCUCCUCUUG-------UUCCG- -5'
31792 5' -54.6 NC_006938.1 + 41023 0.75 0.291427
Target:  5'- gCGGGGCgGGUCGAGccGAGCuuGGGCu -3'
miRNA:   3'- aGCCUCGaCCAGCUCcuCUUGu-UCCG- -5'
31792 5' -54.6 NC_006938.1 + 23021 0.72 0.454241
Target:  5'- -gGGAGCUGGagGuGGAGcACGucuGGCa -3'
miRNA:   3'- agCCUCGACCagCuCCUCuUGUu--CCG- -5'
31792 5' -54.6 NC_006938.1 + 46496 0.71 0.47409
Target:  5'- -aGGAGCUGaUCGGcGGcGGGAUAGGGCc -3'
miRNA:   3'- agCCUCGACcAGCU-CC-UCUUGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 19324 0.71 0.498466
Target:  5'- cCGGAGgUGGcacgguUCuucauggacgcggcgGAGGAGGGCAAGGUg -3'
miRNA:   3'- aGCCUCgACC------AG---------------CUCCUCUUGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 42611 0.71 0.525485
Target:  5'- gUCGGGGCggugGcGUCGAuGGAGuuCGAGGg -3'
miRNA:   3'- -AGCCUCGa---C-CAGCU-CCUCuuGUUCCg -5'
31792 5' -54.6 NC_006938.1 + 19047 0.7 0.536026
Target:  5'- -aGGcGGCcaUGGUCGcGGcGGACGAGGCg -3'
miRNA:   3'- agCC-UCG--ACCAGCuCCuCUUGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 49894 0.7 0.546639
Target:  5'- -gGGuGCUGGUCGAaGGGu-CGAGGUg -3'
miRNA:   3'- agCCuCGACCAGCUcCUCuuGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 31632 0.7 0.583174
Target:  5'- aUGGAcaaGCcGGUCGuGGAGcagaggcgcuuugacGACAGGGCg -3'
miRNA:   3'- aGCCU---CGaCCAGCuCCUC---------------UUGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 4304 0.69 0.589679
Target:  5'- gCGGAGCacGUUGAcgauGGGGAGCucGGCg -3'
miRNA:   3'- aGCCUCGacCAGCU----CCUCUUGuuCCG- -5'
31792 5' -54.6 NC_006938.1 + 4158 0.69 0.600547
Target:  5'- --aGAGCUuGUCGGGGAGGuCGAGcGCg -3'
miRNA:   3'- agcCUCGAcCAGCUCCUCUuGUUC-CG- -5'
31792 5' -54.6 NC_006938.1 + 23518 0.69 0.621262
Target:  5'- aCGG-GCcaGGUCGAGGAGcucuccgGAgAGGGCc -3'
miRNA:   3'- aGCCuCGa-CCAGCUCCUC-------UUgUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 26886 0.69 0.633274
Target:  5'- gUCGGGGCUa--CGAGGAcAAcCAGGGCa -3'
miRNA:   3'- -AGCCUCGAccaGCUCCUcUU-GUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 62674 0.68 0.654013
Target:  5'- cCGGAGCaggccacUGGUCG-GGAGAugAGacggaacuccucGGCc -3'
miRNA:   3'- aGCCUCG-------ACCAGCuCCUCUugUU------------CCG- -5'
31792 5' -54.6 NC_006938.1 + 54687 0.68 0.655103
Target:  5'- aUGGAGCcgUGGUCuGGGAGuc--AGGCg -3'
miRNA:   3'- aGCCUCG--ACCAGcUCCUCuuguUCCG- -5'
31792 5' -54.6 NC_006938.1 + 52232 0.68 0.687663
Target:  5'- gCGGAGggcucuUUGGUgGAGGAGGugGccuguucggaGGGCu -3'
miRNA:   3'- aGCCUC------GACCAgCUCCUCUugU----------UCCG- -5'
31792 5' -54.6 NC_006938.1 + 41166 0.68 0.687663
Target:  5'- uUCGGGGgauGUCGAGGAcccggccacGGAgGAGGCg -3'
miRNA:   3'- -AGCCUCgacCAGCUCCU---------CUUgUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.