miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31792 5' -54.6 NC_006938.1 + 3426 0.76 0.28354
Target:  5'- cCGGGaCUGGgUCGAGGAGGGCuucaagaAGGGCg -3'
miRNA:   3'- aGCCUcGACC-AGCUCCUCUUG-------UUCCG- -5'
31792 5' -54.6 NC_006938.1 + 4158 0.69 0.600547
Target:  5'- --aGAGCUuGUCGGGGAGGuCGAGcGCg -3'
miRNA:   3'- agcCUCGAcCAGCUCCUCUuGUUC-CG- -5'
31792 5' -54.6 NC_006938.1 + 4304 0.69 0.589679
Target:  5'- gCGGAGCacGUUGAcgauGGGGAGCucGGCg -3'
miRNA:   3'- aGCCUCGacCAGCU----CCUCUUGuuCCG- -5'
31792 5' -54.6 NC_006938.1 + 6209 1.13 0.000783
Target:  5'- cUCGGAGCUGGUCGAGGAGAACAAGGCg -3'
miRNA:   3'- -AGCCUCGACCAGCUCCUCUUGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 9695 0.67 0.761281
Target:  5'- cCGGGccaucuacccGCUGuUCGAgcaGGAGAAgGAGGCc -3'
miRNA:   3'- aGCCU----------CGACcAGCU---CCUCUUgUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 9879 0.67 0.740731
Target:  5'- gUC-GAGCUGGcCcAGGAGAA--GGGCg -3'
miRNA:   3'- -AGcCUCGACCaGcUCCUCUUguUCCG- -5'
31792 5' -54.6 NC_006938.1 + 17630 0.67 0.761281
Target:  5'- -gGGAGCUGGUCGGagccaaccucGGcuacgaccuGGACuGGGCc -3'
miRNA:   3'- agCCUCGACCAGCU----------CCu--------CUUGuUCCG- -5'
31792 5' -54.6 NC_006938.1 + 18015 0.67 0.709124
Target:  5'- cCGGuGCUGGU-GAGGAugcGACAGcgcGGCg -3'
miRNA:   3'- aGCCuCGACCAgCUCCUc--UUGUU---CCG- -5'
31792 5' -54.6 NC_006938.1 + 19047 0.7 0.536026
Target:  5'- -aGGcGGCcaUGGUCGcGGcGGACGAGGCg -3'
miRNA:   3'- agCC-UCG--ACCAGCuCCuCUUGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 19324 0.71 0.498466
Target:  5'- cCGGAGgUGGcacgguUCuucauggacgcggcgGAGGAGGGCAAGGUg -3'
miRNA:   3'- aGCCUCgACC------AG---------------CUCCUCUUGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 20733 0.66 0.810185
Target:  5'- cCGGAggcaggugucGCUGaUgGAGGcGGACAAGGUg -3'
miRNA:   3'- aGCCU----------CGACcAgCUCCuCUUGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 23021 0.72 0.454241
Target:  5'- -gGGAGCUGGagGuGGAGcACGucuGGCa -3'
miRNA:   3'- agCCUCGACCagCuCCUCuUGUu--CCG- -5'
31792 5' -54.6 NC_006938.1 + 23518 0.69 0.621262
Target:  5'- aCGG-GCcaGGUCGAGGAGcucuccgGAgAGGGCc -3'
miRNA:   3'- aGCCuCGa-CCAGCUCCUC-------UUgUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 26072 0.67 0.719749
Target:  5'- gUGGcAGCUGGUCGcgcGGAGGAguccccGGCa -3'
miRNA:   3'- aGCC-UCGACCAGCu--CCUCUUguu---CCG- -5'
31792 5' -54.6 NC_006938.1 + 26886 0.69 0.633274
Target:  5'- gUCGGGGCUa--CGAGGAcAAcCAGGGCa -3'
miRNA:   3'- -AGCCUCGAccaGCUCCUcUU-GUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 27456 0.77 0.225865
Target:  5'- gCGGAGC-GGcCGAGGAGcACGAGGa -3'
miRNA:   3'- aGCCUCGaCCaGCUCCUCuUGUUCCg -5'
31792 5' -54.6 NC_006938.1 + 27620 0.67 0.761281
Target:  5'- -aGGAGCgGGUCaugagugacuggGAGuGGGAGCAGuGGUg -3'
miRNA:   3'- agCCUCGaCCAG------------CUC-CUCUUGUU-CCG- -5'
31792 5' -54.6 NC_006938.1 + 30603 0.66 0.791102
Target:  5'- -aGG-GCUGGgagacCGAGGAGGucguCGGGaGCa -3'
miRNA:   3'- agCCuCGACCa----GCUCCUCUu---GUUC-CG- -5'
31792 5' -54.6 NC_006938.1 + 30836 0.67 0.761281
Target:  5'- cUGGAGgaGGUCGccGAGGucucUggGGCa -3'
miRNA:   3'- aGCCUCgaCCAGCucCUCUu---GuuCCG- -5'
31792 5' -54.6 NC_006938.1 + 30896 0.66 0.807367
Target:  5'- -aGGAGCUGGagaCGcAGGAGGcggacggagcccacGCGucGGGCc -3'
miRNA:   3'- agCCUCGACCa--GC-UCCUCU--------------UGU--UCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.