miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31792 5' -54.6 NC_006938.1 + 9695 0.67 0.761281
Target:  5'- cCGGGccaucuacccGCUGuUCGAgcaGGAGAAgGAGGCc -3'
miRNA:   3'- aGCCU----------CGACcAGCU---CCUCUUgUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 18015 0.67 0.709124
Target:  5'- cCGGuGCUGGU-GAGGAugcGACAGcgcGGCg -3'
miRNA:   3'- aGCCuCGACCAgCUCCUc--UUGUU---CCG- -5'
31792 5' -54.6 NC_006938.1 + 48779 0.67 0.709124
Target:  5'- cUGG-GCgaUGGUCGAcucaacguGGAGcagGACGAGGCa -3'
miRNA:   3'- aGCCuCG--ACCAGCU--------CCUC---UUGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 26072 0.67 0.719749
Target:  5'- gUGGcAGCUGGUCGcgcGGAGGAguccccGGCa -3'
miRNA:   3'- aGCC-UCGACCAGCu--CCUCUUguu---CCG- -5'
31792 5' -54.6 NC_006938.1 + 57751 0.67 0.731337
Target:  5'- gUCGGGGCggaccugacccuggaGGUgGAGGGGAucucCGAGaGCu -3'
miRNA:   3'- -AGCCUCGa--------------CCAgCUCCUCUu---GUUC-CG- -5'
31792 5' -54.6 NC_006938.1 + 9879 0.67 0.740731
Target:  5'- gUC-GAGCUGGcCcAGGAGAA--GGGCg -3'
miRNA:   3'- -AGcCUCGACCaGcUCCUCUUguUCCG- -5'
31792 5' -54.6 NC_006938.1 + 57369 0.67 0.740731
Target:  5'- gUCcGAGCUgauagaGGUCGGugacGAGAGCGAGGUc -3'
miRNA:   3'- -AGcCUCGA------CCAGCUc---CUCUUGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 17630 0.67 0.761281
Target:  5'- -gGGAGCUGGUCGGagccaaccucGGcuacgaccuGGACuGGGCc -3'
miRNA:   3'- agCCUCGACCAGCU----------CCu--------CUUGuUCCG- -5'
31792 5' -54.6 NC_006938.1 + 27620 0.67 0.761281
Target:  5'- -aGGAGCgGGUCaugagugacuggGAGuGGGAGCAGuGGUg -3'
miRNA:   3'- agCCUCGaCCAG------------CUC-CUCUUGUU-CCG- -5'
31792 5' -54.6 NC_006938.1 + 52232 0.68 0.687663
Target:  5'- gCGGAGggcucuUUGGUgGAGGAGGugGccuguucggaGGGCu -3'
miRNA:   3'- aGCCUC------GACCAgCUCCUCUugU----------UCCG- -5'
31792 5' -54.6 NC_006938.1 + 54687 0.68 0.655103
Target:  5'- aUGGAGCcgUGGUCuGGGAGuc--AGGCg -3'
miRNA:   3'- aGCCUCG--ACCAGcUCCUCuuguUCCG- -5'
31792 5' -54.6 NC_006938.1 + 26886 0.69 0.633274
Target:  5'- gUCGGGGCUa--CGAGGAcAAcCAGGGCa -3'
miRNA:   3'- -AGCCUCGAccaGCUCCUcUU-GUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 35007 0.78 0.203352
Target:  5'- aCGGAGCUGGacuUCGAGGAGGAgAuccGCa -3'
miRNA:   3'- aGCCUCGACC---AGCUCCUCUUgUuc-CG- -5'
31792 5' -54.6 NC_006938.1 + 27456 0.77 0.225865
Target:  5'- gCGGAGC-GGcCGAGGAGcACGAGGa -3'
miRNA:   3'- aGCCUCGaCCaGCUCCUCuUGUUCCg -5'
31792 5' -54.6 NC_006938.1 + 3426 0.76 0.28354
Target:  5'- cCGGGaCUGGgUCGAGGAGGGCuucaagaAGGGCg -3'
miRNA:   3'- aGCCUcGACC-AGCUCCUCUUG-------UUCCG- -5'
31792 5' -54.6 NC_006938.1 + 23021 0.72 0.454241
Target:  5'- -gGGAGCUGGagGuGGAGcACGucuGGCa -3'
miRNA:   3'- agCCUCGACCagCuCCUCuUGUu--CCG- -5'
31792 5' -54.6 NC_006938.1 + 19324 0.71 0.498466
Target:  5'- cCGGAGgUGGcacgguUCuucauggacgcggcgGAGGAGGGCAAGGUg -3'
miRNA:   3'- aGCCUCgACC------AG---------------CUCCUCUUGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 19047 0.7 0.536026
Target:  5'- -aGGcGGCcaUGGUCGcGGcGGACGAGGCg -3'
miRNA:   3'- agCC-UCG--ACCAGCuCCuCUUGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 49894 0.7 0.546639
Target:  5'- -gGGuGCUGGUCGAaGGGu-CGAGGUg -3'
miRNA:   3'- agCCuCGACCAGCUcCUCuuGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 31632 0.7 0.583174
Target:  5'- aUGGAcaaGCcGGUCGuGGAGcagaggcgcuuugacGACAGGGCg -3'
miRNA:   3'- aGCCU---CGaCCAGCuCCUC---------------UUGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.