miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31792 5' -54.6 NC_006938.1 + 62674 0.68 0.654013
Target:  5'- cCGGAGCaggccacUGGUCG-GGAGAugAGacggaacuccucGGCc -3'
miRNA:   3'- aGCCUCG-------ACCAGCuCCUCUugUU------------CCG- -5'
31792 5' -54.6 NC_006938.1 + 57751 0.67 0.731337
Target:  5'- gUCGGGGCggaccugacccuggaGGUgGAGGGGAucucCGAGaGCu -3'
miRNA:   3'- -AGCCUCGa--------------CCAgCUCCUCUu---GUUC-CG- -5'
31792 5' -54.6 NC_006938.1 + 57369 0.67 0.740731
Target:  5'- gUCcGAGCUgauagaGGUCGGugacGAGAGCGAGGUc -3'
miRNA:   3'- -AGcCUCGA------CCAGCUc---CUCUUGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 54687 0.68 0.655103
Target:  5'- aUGGAGCcgUGGUCuGGGAGuc--AGGCg -3'
miRNA:   3'- aGCCUCG--ACCAGcUCCUCuuguUCCG- -5'
31792 5' -54.6 NC_006938.1 + 52232 0.68 0.687663
Target:  5'- gCGGAGggcucuUUGGUgGAGGAGGugGccuguucggaGGGCu -3'
miRNA:   3'- aGCCUC------GACCAgCUCCUCUugU----------UCCG- -5'
31792 5' -54.6 NC_006938.1 + 51775 0.66 0.80073
Target:  5'- -gGGAGCcGGUUGAcucgcGGAGcccaGAgAGGGCg -3'
miRNA:   3'- agCCUCGaCCAGCU-----CCUC----UUgUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 50480 0.67 0.740731
Target:  5'- gCGGAGCaGGUUGAuGcGAcGAGCGGuGGCc -3'
miRNA:   3'- aGCCUCGaCCAGCU-C-CU-CUUGUU-CCG- -5'
31792 5' -54.6 NC_006938.1 + 49894 0.7 0.546639
Target:  5'- -gGGuGCUGGUCGAaGGGu-CGAGGUg -3'
miRNA:   3'- agCCuCGACCAGCUcCUCuuGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 48779 0.67 0.709124
Target:  5'- cUGG-GCgaUGGUCGAcucaacguGGAGcagGACGAGGCa -3'
miRNA:   3'- aGCCuCG--ACCAGCU--------CCUC---UUGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 47955 0.67 0.719749
Target:  5'- gUCGGgucGGCcgUGGUCGAcugcaggacGGGGAGCGagccgccuguguAGGCg -3'
miRNA:   3'- -AGCC---UCG--ACCAGCU---------CCUCUUGU------------UCCG- -5'
31792 5' -54.6 NC_006938.1 + 46673 0.67 0.719749
Target:  5'- gUCGGcAGCUGG----GGAGcGCGGGGCc -3'
miRNA:   3'- -AGCC-UCGACCagcuCCUCuUGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 46496 0.71 0.47409
Target:  5'- -aGGAGCUGaUCGGcGGcGGGAUAGGGCc -3'
miRNA:   3'- agCCUCGACcAGCU-CC-UCUUGUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 45903 0.66 0.771367
Target:  5'- aUCGGcgGGCUG--CGcGGAGAACGuGGCa -3'
miRNA:   3'- -AGCC--UCGACcaGCuCCUCUUGUuCCG- -5'
31792 5' -54.6 NC_006938.1 + 42611 0.71 0.525485
Target:  5'- gUCGGGGCggugGcGUCGAuGGAGuuCGAGGg -3'
miRNA:   3'- -AGCCUCGa---C-CAGCU-CCUCuuGUUCCg -5'
31792 5' -54.6 NC_006938.1 + 41166 0.68 0.687663
Target:  5'- uUCGGGGgauGUCGAGGAcccggccacGGAgGAGGCg -3'
miRNA:   3'- -AGCCUCgacCAGCUCCU---------CUUgUUCCG- -5'
31792 5' -54.6 NC_006938.1 + 41023 0.75 0.291427
Target:  5'- gCGGGGCgGGUCGAGccGAGCuuGGGCu -3'
miRNA:   3'- aGCCUCGaCCAGCUCcuCUUGu-UCCG- -5'
31792 5' -54.6 NC_006938.1 + 40192 0.66 0.799775
Target:  5'- cCGGcGCUGuccgcGUCGAGGAagagcucGAACGuguuGGCa -3'
miRNA:   3'- aGCCuCGAC-----CAGCUCCU-------CUUGUu---CCG- -5'
31792 5' -54.6 NC_006938.1 + 36678 0.66 0.794973
Target:  5'- uUCGGAGcCUGGagagacagagcccacUgCGAGGAGAGCAu--- -3'
miRNA:   3'- -AGCCUC-GACC---------------A-GCUCCUCUUGUuccg -5'
31792 5' -54.6 NC_006938.1 + 35007 0.78 0.203352
Target:  5'- aCGGAGCUGGacuUCGAGGAGGAgAuccGCa -3'
miRNA:   3'- aGCCUCGACC---AGCUCCUCUUgUuc-CG- -5'
31792 5' -54.6 NC_006938.1 + 31840 0.66 0.799775
Target:  5'- -gGGAGCUguuccgucgcgcGGUCGAGGguguccuGGAGCcggucguGGCa -3'
miRNA:   3'- agCCUCGA------------CCAGCUCC-------UCUUGuu-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.