miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31797 5' -52.9 NC_006938.1 + 12202 0.66 0.878228
Target:  5'- -uUGGcgUG-GGCCUgcGAGCCAGgACGCu -3'
miRNA:   3'- guACCaaGCgCUGGA--UUCGGUC-UGCG- -5'
31797 5' -52.9 NC_006938.1 + 8084 0.66 0.878228
Target:  5'- cCAUGacGggCGgGAgCUGGGCCGGGuCGCc -3'
miRNA:   3'- -GUAC--CaaGCgCUgGAUUCGGUCU-GCG- -5'
31797 5' -52.9 NC_006938.1 + 48539 0.66 0.870384
Target:  5'- gCGUGGgcCG-GACCUccGCCAucuuGAUGCg -3'
miRNA:   3'- -GUACCaaGCgCUGGAuuCGGU----CUGCG- -5'
31797 5' -52.9 NC_006938.1 + 6229 0.66 0.870384
Target:  5'- --cGGUcCGCGuCCUcguAGCCcGugGCu -3'
miRNA:   3'- guaCCAaGCGCuGGAu--UCGGuCugCG- -5'
31797 5' -52.9 NC_006938.1 + 41383 0.66 0.865556
Target:  5'- gCAUGGUUCGCcucgacgggcucgucGGCCUgugggucgugGAGCuCGGACu- -3'
miRNA:   3'- -GUACCAAGCG---------------CUGGA----------UUCG-GUCUGcg -5'
31797 5' -52.9 NC_006938.1 + 22391 0.66 0.853952
Target:  5'- -cUGGUgcagaacccCGCGACCcaGAGCgAGACGg -3'
miRNA:   3'- guACCAa--------GCGCUGGa-UUCGgUCUGCg -5'
31797 5' -52.9 NC_006938.1 + 6120 0.66 0.845379
Target:  5'- gCAUGGg--GCGACUaugccgGAGCCacgggcuacgaGGACGCg -3'
miRNA:   3'- -GUACCaagCGCUGGa-----UUCGG-----------UCUGCG- -5'
31797 5' -52.9 NC_006938.1 + 21641 0.66 0.845379
Target:  5'- --cGGUgaccaggGCGACgUGGGCCGcGCGCg -3'
miRNA:   3'- guaCCAag-----CGCUGgAUUCGGUcUGCG- -5'
31797 5' -52.9 NC_006938.1 + 50172 0.66 0.845379
Target:  5'- -----aUCGCGGCCUGAGCguuGGCGg -3'
miRNA:   3'- guaccaAGCGCUGGAUUCGgu-CUGCg -5'
31797 5' -52.9 NC_006938.1 + 49625 0.67 0.840126
Target:  5'- --aGGUUCGCcgagaucaccgagaaGACC-GAGCCguGGAUGCc -3'
miRNA:   3'- guaCCAAGCG---------------CUGGaUUCGG--UCUGCG- -5'
31797 5' -52.9 NC_006938.1 + 3919 0.67 0.818339
Target:  5'- uCGUGGgccUCGUucaaGACCUAcuucGGCguGugGCg -3'
miRNA:   3'- -GUACCa--AGCG----CUGGAU----UCGguCugCG- -5'
31797 5' -52.9 NC_006938.1 + 56758 0.67 0.808917
Target:  5'- -cUGGUUCGUcGCCc-AGUCAGGCGg -3'
miRNA:   3'- guACCAAGCGcUGGauUCGGUCUGCg -5'
31797 5' -52.9 NC_006938.1 + 29462 0.67 0.805094
Target:  5'- gCAUGcuGUUCGacgaGACCaacucucugcuGCCAGGCGCg -3'
miRNA:   3'- -GUAC--CAAGCg---CUGGauu--------CGGUCUGCG- -5'
31797 5' -52.9 NC_006938.1 + 18198 0.67 0.799307
Target:  5'- --cGGUcaCGCGAgUUAucaGGUCGGACGCg -3'
miRNA:   3'- guaCCAa-GCGCUgGAU---UCGGUCUGCG- -5'
31797 5' -52.9 NC_006938.1 + 19388 0.68 0.76024
Target:  5'- --aGGUUCGCGAgggcguguacaacuaCUuuGCCAGGCGg -3'
miRNA:   3'- guaCCAAGCGCUg--------------GAuuCGGUCUGCg -5'
31797 5' -52.9 NC_006938.1 + 51476 0.68 0.759209
Target:  5'- -----gUCGCGGCCgGAGCCGGG-GCa -3'
miRNA:   3'- guaccaAGCGCUGGaUUCGGUCUgCG- -5'
31797 5' -52.9 NC_006938.1 + 38039 0.68 0.759209
Target:  5'- --gGGUugcUCGCG-CCaGAGCC-GACGCc -3'
miRNA:   3'- guaCCA---AGCGCuGGaUUCGGuCUGCG- -5'
31797 5' -52.9 NC_006938.1 + 55380 0.68 0.748826
Target:  5'- aCAUGcGUUCGUgaauGACCUugcGCCGgGugGCg -3'
miRNA:   3'- -GUAC-CAAGCG----CUGGAuu-CGGU-CugCG- -5'
31797 5' -52.9 NC_006938.1 + 39927 0.69 0.717006
Target:  5'- uCGUGGggCGgGGCCac-GCuCAGugGCg -3'
miRNA:   3'- -GUACCaaGCgCUGGauuCG-GUCugCG- -5'
31797 5' -52.9 NC_006938.1 + 38806 0.69 0.706214
Target:  5'- gCAUGG-UCGCGAUgaAggcGGCCuggAGACGCc -3'
miRNA:   3'- -GUACCaAGCGCUGgaU---UCGG---UCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.