miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31798 5' -55.5 NC_006938.1 + 13017 0.66 0.769829
Target:  5'- uUCUGgggCCGGUGGuCCAUGAGaGAGGucgaGCa -3'
miRNA:   3'- cGGACa--GGUUACU-GGUGCUC-CUCC----CG- -5'
31798 5' -55.5 NC_006938.1 + 22785 0.66 0.739379
Target:  5'- -gCUGUUgGAggacaUGACCACGuGGAgguaguucGGGCa -3'
miRNA:   3'- cgGACAGgUU-----ACUGGUGCuCCU--------CCCG- -5'
31798 5' -55.5 NC_006938.1 + 5924 0.66 0.739379
Target:  5'- cGCUgcgcUCCuuuGUGaACCAguccauaGAGGAGGGCa -3'
miRNA:   3'- -CGGac--AGGu--UAC-UGGUg------CUCCUCCCG- -5'
31798 5' -55.5 NC_006938.1 + 3841 0.66 0.729005
Target:  5'- cGCCcgacgagcGUCuUggUGAUCuGCGAGGuGGGCg -3'
miRNA:   3'- -CGGa-------CAG-GuuACUGG-UGCUCCuCCCG- -5'
31798 5' -55.5 NC_006938.1 + 24034 0.67 0.707987
Target:  5'- gGCCaagGUCaag-GGCCACGAGccggagaAGGGCa -3'
miRNA:   3'- -CGGa--CAGguuaCUGGUGCUCc------UCCCG- -5'
31798 5' -55.5 NC_006938.1 + 6134 0.67 0.697363
Target:  5'- uGCCggagCCAcgGGCUACGAGGAcGcGGa -3'
miRNA:   3'- -CGGaca-GGUuaCUGGUGCUCCU-C-CCg -5'
31798 5' -55.5 NC_006938.1 + 32817 0.67 0.695231
Target:  5'- gGCCgacaaccccgCCAAgcUGGCCGCGuGGcucgAGGGCa -3'
miRNA:   3'- -CGGaca-------GGUU--ACUGGUGCuCC----UCCCG- -5'
31798 5' -55.5 NC_006938.1 + 15168 0.67 0.686679
Target:  5'- aGCCgGUgaCCAcgGuguacgagcaGCCACGGGaGAGGGUc -3'
miRNA:   3'- -CGGaCA--GGUuaC----------UGGUGCUC-CUCCCG- -5'
31798 5' -55.5 NC_006938.1 + 51790 0.67 0.685608
Target:  5'- aGCCUGUggCCAGUGGggagccgguugacUCGCGgagcccAGaGAGGGCg -3'
miRNA:   3'- -CGGACA--GGUUACU-------------GGUGC------UC-CUCCCG- -5'
31798 5' -55.5 NC_006938.1 + 6811 0.67 0.675944
Target:  5'- aCCUGUCCAcgGuCgACaAGGccgAGGGCu -3'
miRNA:   3'- cGGACAGGUuaCuGgUGcUCC---UCCCG- -5'
31798 5' -55.5 NC_006938.1 + 55821 0.67 0.674869
Target:  5'- cGCCUGucugggcuucgcuUCCGGUucuacGACgGCGGGGAGGa- -3'
miRNA:   3'- -CGGAC-------------AGGUUA-----CUGgUGCUCCUCCcg -5'
31798 5' -55.5 NC_006938.1 + 3251 0.68 0.632705
Target:  5'- uGCCgcccUUCAAUcACCAgGAGGAGGaGCu -3'
miRNA:   3'- -CGGac--AGGUUAcUGGUgCUCCUCC-CG- -5'
31798 5' -55.5 NC_006938.1 + 52216 0.68 0.632705
Target:  5'- gGCCUGUUUggUGGagGC--GGAGGGCu -3'
miRNA:   3'- -CGGACAGGuuACUggUGcuCCUCCCG- -5'
31798 5' -55.5 NC_006938.1 + 61812 0.69 0.600233
Target:  5'- cGCC-GUCCcc-GuCCAgGAGGAGGGa -3'
miRNA:   3'- -CGGaCAGGuuaCuGGUgCUCCUCCCg -5'
31798 5' -55.5 NC_006938.1 + 41887 0.69 0.589451
Target:  5'- gGCCUGUCCGuUGGCCcUGcuGuccuGGGCa -3'
miRNA:   3'- -CGGACAGGUuACUGGuGCucCu---CCCG- -5'
31798 5' -55.5 NC_006938.1 + 61714 0.7 0.50405
Target:  5'- cUCUcGUCCAcaaGACCgaagucaaaccccAUGAGGAGGGCg -3'
miRNA:   3'- cGGA-CAGGUua-CUGG-------------UGCUCCUCCCG- -5'
31798 5' -55.5 NC_006938.1 + 14495 0.7 0.494866
Target:  5'- uCCUGUCgGA-GACCuucucCGAGGAGGaGUg -3'
miRNA:   3'- cGGACAGgUUaCUGGu----GCUCCUCC-CG- -5'
31798 5' -55.5 NC_006938.1 + 3924 0.7 0.481738
Target:  5'- gGCCUcGUUCAA-GACCuacuucggcgugugGCG-GGAGGGCu -3'
miRNA:   3'- -CGGA-CAGGUUaCUGG--------------UGCuCCUCCCG- -5'
31798 5' -55.5 NC_006938.1 + 44542 0.71 0.464829
Target:  5'- cCCUGUCCAAUGcauCCGgGAuguggaugauGGAGGGa -3'
miRNA:   3'- cGGACAGGUUACu--GGUgCU----------CCUCCCg -5'
31798 5' -55.5 NC_006938.1 + 24468 0.74 0.315379
Target:  5'- cGCCUGcUCCAGgaugGACaCGCGcuGAGGGUg -3'
miRNA:   3'- -CGGAC-AGGUUa---CUG-GUGCucCUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.